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AT5G48300.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
FP Images

Arabidopsis cell culture (plastidal marker)

At5g48300-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ADP glucose pyrophosphorylase 1
Curator
Summary (TAIR10)
Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
Computational
Description (TAIR10)
ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-1822BioGrid:20129EC:2.7.7.27eggNOG:COG0448eggNOG:ENOG410IMYMEMBL:AB039889EMBL:AP000372
EMBL:AY049265EMBL:AY065428EMBL:AY090283EMBL:AY096379EMBL:CP002688EMBL:U70616EMBL:U72351
EMBL:X73365EnsemblPlants:AT5G48300EnsemblPlants:AT5G48300.1entrez:834883Gene3D:3.90.550.10GeneID:834883Genevisible:P55228
GO:GO:0005524GO:GO:0005978GO:GO:0008878GO:GO:0009507GO:GO:0009570GO:GO:0019252GO:GO:0030931
GO:GO:0048046GO:GO:0048573Gramene:AT5G48300.1gramene_plant_reactome:1119477gramene_plant_reactome:6875956hmmpanther:PTHR22572hmmpanther:PTHR22572:SF101
HOGENOM:HOG000278604InParanoid:P55228IntAct:P55228InterPro:IPR005835InterPro:IPR005836InterPro:IPR011004InterPro:IPR011831
InterPro:IPR029044iPTMnet:P55228KEGG:00500+2.7.7.27KEGG:00520+2.7.7.27KEGG:ath:AT5G48300KO:K00975OMA:FGCIDSD
PaxDb:P55228Pfam:P55228Pfam:PF00483PhylomeDB:P55228PRIDE:P55228PRO:PR:P55228PROSITE:PS00808
PROSITE:PS00809PROSITE:PS00810ProteinModelPortal:P55228Proteomes:UP000006548RefSeq:NP_199641.1SABIO-RK:P55228scanprosite:PS00808
scanprosite:PS00809scanprosite:PS00810SMR:P55228STRING:3702.AT5G48300.1SUPFAM:SSF51161SUPFAM:SSF53448TAIR:AT5G48300
tair10-symbols:ADG1tair10-symbols:APS1TIGRfam:TIGR02091TIGRFAMs:TIGR02091UniGene:At.670UniPathway:UPA00152unipathway:UPA00164
UniProt:P55228
Coordinates (TAIR10) chr5:+:19570326..19572557
Molecular Weight (calculated) 56653.70 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.13
Length 520 amino acids
Sequence (TAIR10)
(BLAST)
001: MASVSAIGVL KVPPASTSNS TGKATEAVPT RTLSFSSSVT SSDDKISLKS TVSRLCKSVV RRNPIIVSPK AVSDSQNSQT CLDPDASSSV LGIILGGGAG
101: TRLYPLTKKR AKPAVPLGAN YRLIDIPVSN CLNSNISKIY VLTQFNSASL NRHLSRAYAS NMGGYKNEGF VEVLAAQQSP ENPNWFQGTA DAVRQYLWLF
201: EEHNVLEYLI LAGDHLYRMD YEKFIQAHRE TDADITVAAL PMDEQRATAF GLMKIDEEGR IIEFAEKPKG EHLKAMKVDT TILGLDDQRA KEMPFIASMG
301: IYVVSRDVML DLLRNQFPGA NDFGSEVIPG ATSLGLRVQA YLYDGYWEDI GTIEAFYNAN LGITKKPVPD FSFYDRSAPI YTQPRYLPPS KMLDADVTDS
401: VIGEGCVIKN CKIHHSVVGL RSCISEGAII EDSLLMGADY YETATEKSLL SAKGSVPIGI GKNSHIKRAI IDKNARIGDN VKIINSDNVQ EAARETDGYF
501: IKSGIVTVIK DALIPTGTVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)