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AT5G48270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant protein of unknown function (DUF868)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein of unknown function (DUF868); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT4G12690.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9ReggNOG:ENOG411054TEMBL:AB023039EMBL:CP002688
EMBL:DQ132748EMBL:DQ447050EnsemblPlants:AT5G48270EnsemblPlants:AT5G48270.1
entrez:834880GeneID:834880Gramene:AT5G48270.1hmmpanther:PTHR31972
hmmpanther:PTHR31972:SF2HOGENOM:HOG000238880InterPro:IPR008586KEGG:ath:AT5G48270
OMA:WLFASSEPfam:PF05910PhylomeDB:Q9LUA7Proteomes:UP000006548
RefSeq:NP_199638.1TAIR:AT5G48270UniGene:At.64275UniProt:Q9LUA7
Coordinates (TAIR10) chr5:-:19564744..19565712
Molecular Weight (calculated) 35867.60 Da
IEP (calculated) 6.79
GRAVY (calculated) -0.18
Length 322 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSFRMPSIG SQPTAFAAKI TDNPKTVAQL KSAASPSPHS TVTCGYQAHV AGFFRNVTVL WSKNLMNHSL TVMVSSLDND MNYCCKIDLV KPWQFWSKRG
101: SKSFDVEGNF VEVFWDLRSA KLAGNGSPEP VSDYYVAVVS DEEVVLLLGD LKQKAYKRTK SRPALVEGFI YFKKESIFGK KTFSTRARFD EQRKEHEVVV
201: ESSNGAAEPE MWISVDGIVV VNVKNLQWKF RGNQMVMVDR TPVMVYYDVH DWLFASSETA ASSGLFLFKP VPVGAMVDES FSDAEEGDSG GGSSPLSRYN
301: SASSGFGPLH DFCLFLYAWK LE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)