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AT5G48250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : B-box type zinc finger protein with CCT domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
B-box type zinc finger protein with CCT domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 9 (TAIR:AT3G07650.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20125eggNOG:ENOG410IHQ3eggNOG:ENOG410YA5CEMBL:AB023039EMBL:AY039957EMBL:AY142607EMBL:CP002688
EnsemblPlants:AT5G48250EnsemblPlants:AT5G48250.1entrez:834878GeneID:834878Genevisible:Q9LUA9GO:GO:0003700GO:GO:0005634
GO:GO:0005886GO:GO:0006355GO:GO:0008270Gramene:AT5G48250.1hmmpanther:PTHR31717hmmpanther:PTHR31717:SF8HOGENOM:HOG000116529
InParanoid:Q9LUA9IntAct:Q9LUA9InterPro:IPR000315InterPro:IPR010402iPTMnet:Q9LUA9KEGG:ath:AT5G48250OMA:SACEQGM
PaxDb:Q9LUA9Pfam:PF00643Pfam:PF06203Pfam:Q9LUA9Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q9LUA9
PRIDE:Q9LUA9PRO:PR:Q9LUA9PROSITE:PS50119PROSITE:PS51017ProteinModelPortal:Q9LUA9Proteomes:UP000006548RefSeq:NP_199636.1
SMART:SM00336STRING:3702.AT5G48250.1TAIR:AT5G48250UniGene:At.7080UniProt:Q9LUA9
Coordinates (TAIR10) chr5:-:19561719..19563113
Molecular Weight (calculated) 41246.80 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.69
Length 373 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCER CNAQPASVRC SDERVSLCQN CDWSGHDGKN STTTSHHKRQ TINCYSGCPS
101: SAELSSIWSF CMDLNISSAE ESACEQGMGL MTIDEDGTGE KSGVQKINVE QPETSSAAQG MDHSSVPENS SMAKELGVCE DDFNGNLISD EVDLALENYE
201: ELFGSAFNSS RYLFEHGGIG SLFEKDEAHE GSMQQPALSN NASADSFMTC RTEPIICYSS KPAHSNISFS GITGESNAGD FQDCGASSMK QLSREPQPWC
301: HPTAQDIIAS SHATTRNNAV MRYKEKKKAR KFDKRVRYVS RKERADVRRR VKGRFVKSGE AYDYDPMSPT RSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)