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AT5G48220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: indole-3-glycerol-phosphate synthase activity, catalytic activity; INVOLVED IN: metabolic process, tryptophan metabolic process; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Indole-3-glycerol phosphate synthase, conserved site (InterPro:IPR001468), Ribulose-phosphate binding barrel (InterPro:IPR011060), Indole-3-glycerol phosphate synthase (InterPro:IPR013798); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT2G04400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G48220-MONOMERBioCyc:ARA:GQT-2077-MONOMERBioCyc:ARA:GQT-2078-MONOMEReggNOG:COG0134eggNOG:KOG4201EMBL:AB023039EMBL:AY050327
EMBL:AY052223EMBL:AY060498EMBL:CP002688EnsemblPlants:AT5G48220EnsemblPlants:AT5G48220.1entrez:834875ExpressionAtlas:Q9LUB2
Gene3D:3.20.20.70GeneID:834875GO:GO:0004425GO:GO:0006568GO:GO:0009507GO:GO:0009534GO:GO:0009570
Gramene:AT5G48220.1gramene_pathway:4.1.1.48gramene_pathway:TRPSYN-PWYHAMAP:MF_00134_Bhmmpanther:PTHR22854hmmpanther:PTHR22854:SF10HOGENOM:HOG000230463
InterPro:IPR001468InterPro:IPR011060InterPro:IPR013785InterPro:IPR013798KEGG:00400+4.1.1.48OMA:WNKDVEVPfam:PF00218
PhylomeDB:Q9LUB2PROSITE:PS00614Proteomes:UP000006548RefSeq:NP_199633.1scanprosite:PS00614SMR:Q9LUB2STRING:3702.AT5G48220.1
SUPFAM:SSF51366TAIR:AT5G48220UniGene:At.24167UniGene:At.49143unipathway:UPA00035UniProt:Q9LUB2
Coordinates (TAIR10) chr5:+:19549930..19552046
Molecular Weight (calculated) 41970.70 Da
IEP (calculated) 5.82
GRAVY (calculated) -0.23
Length 379 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAALLSLQP FPSSATQRRL SPFNLHNTLT RPSSYAPLRA QKSGITEGSD SALEAKVSEQ EVGMYQNEVV ESQGIRIRRR PPTGPPLHYV GPFEFRLQNE
101: GNTPRNILEE IVWHKDKEVA QMKERKPLYS LKKALDNVPP AKDFIGALRS AHQRTGLPGL IAEVKKASPS RGILREDFNP VEIAQAYEKG GAACLSVLTD
201: DKYFKGSYEN LQAIMEAGVK CPLLLKEFIV EAWQIYYGRS KGADAVLLIA SVLPDLDIKY MIKICKILGM ATLVEVHDER EMDRVLAIEG VELIGINNRN
301: LETFEVDLGI TKKLLEGERG ELIRQKDILV VGESGLFTPE DIAFVQEAGV KAVLVGESLI KQSDPGKAIS TLFGRDVSE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)