AT5G48110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein | ||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G70080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19501157..19504357 | ||||||||
| Molecular Weight (calculated) | 66949.40 Da | ||||||||
| IEP (calculated) | 6.26 | ||||||||
| GRAVY (calculated) | -0.28 | ||||||||
| Length | 575 amino acids | ||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAITKNGSL SQTLVHCGPK SLSSFIPVRC LRFSKNPFPK KLVVTRARTS INSDHEAANR PLFQFPPSLL DDRFLSISAN QSEIDSLGRD IEALKAKVSE 101: KLVCMDVKER IHLIHLLVSL GVAYHFEKQI EEFLKVDFEN VEDMNLGEED MYSISVIFRV FRLYRHKLSS DVFNRFKEEN GDFKKCLLDD KKSLTKQWAS 201: RGNTWNYFVG GSNEEHLSGH IKNVLYLSQQ ENAEVVMSRE YIQFYEQETH HDETLLKFAK INFKFMQLHY VQELQTIVKW WKELDLESKI PNYYRVRAVE 301: CLYWAMAVYM EPQYSVARII LSKSLVLWTI IDDLYDAYCT LPEAIAFTEN MERWETDAID MPDHMKVLLR SLIDLMEDFK GEVRSEGRLY SVEYGIDEWK 401: RLFRADLTIS KWARTGYIPN YDEYMEVGIV TGGVDVTVAF AFIGMGEAGK EAFDWIRSRP KFIQTIDLKS RLRDDVATYK DEMARGEIAT GINCYMKQYK 501: VTEEEAFLEF HRRIKHTSKL VNEEYFKTTV PLKLVRIAFN VGRVIDTNYK HGDGLTYTGI VGGQITSLFL DLITI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)