AT5G48050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19472661..19473770 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 42542.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.64 | ||||||||||||||||||||||||
| Length | 369 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADTTLSSYE KSFGIMQIRA YIFVTLDLNK LNYDVWRELF ETLCLSFGVL GHIDGSSTPT PMTEKRWKER DGLVKMWIYG TITDSLLDTI IKVGCTARDL 101: WLSLENLFRD NKEARALQFE NELRTTTIDD LSVHEYCQKL KSLSDLLTNV DSPISDRVLV MHLLNGLTEK YDYILNVIKH KSPFPSFTEA RSMLLMEESR 201: LSNKSKSSLS HTNHPSLSNV LFTVPRQQER YPQEYHNNNS NMGRGRSKKK NRGGGSSDGR YNNNNNWRLN QPPTWIYGPP QSPYMYPHGG PQFFHKKTYF 301: PQQPPVYMSV TSHKPSPTSI LEPYNPYLHG DARVNYISTS MADQSTFMPS HFPQTYSSMS LSDPPEEMW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)