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AT5G48030.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21841088 (2011): mitochondrion
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gametophytic factor 2
Curator
Summary (TAIR10)
encodes a mitochondrially targeted DNAJ protein involved in female gametophyte development.
Computational
Description (TAIR10)
gametophytic factor 2 (GFA2); FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: in 7 processes; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT1G28210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0715EMBL:AB017064EMBL:AK118588
EMBL:AY085227EMBL:AY103490EMBL:CP002688EnsemblPlants:AT5G48030
EnsemblPlants:AT5G48030.1entrez:834854Gene3D:1.10.287.110Gene3D:2.10.230.10
GeneID:834854GO:GO:0000740GO:GO:0005524GO:GO:0005739
GO:GO:0006915GO:GO:0009408GO:GO:0009553GO:GO:0009558
GO:GO:0010197GO:GO:0010198GO:GO:0046872GO:GO:0051085
Gramene:AT5G48030.1HAMAP:MF_01152hmmpanther:PTHR24078hmmpanther:PTHR24078:SF283
HOGENOM:HOG000226717InterPro:IPR001305InterPro:IPR001623InterPro:IPR002939
InterPro:IPR008971InterPro:IPR012724InterPro:IPR018253KEGG:ath:AT5G48030
KO:K03686OMA:SQSWQFRPaxDb:Q8GWW8Pfam:PF00226
Pfam:PF00684Pfam:PF01556Pfscan:PS50076Pfscan:PS51188
PhylomeDB:Q8GWW8PRINTS:PR00625PROSITE:PS00636PROSITE:PS50076
PROSITE:PS51188ProteinModelPortal:Q8GWW8Proteomes:UP000006548RefSeq:NP_568690.1
scanprosite:PS00636SMART:SM00271SMR:Q8GWW8STRING:3702.AT5G48030.1
SUPFAM:SSF46565SUPFAM:SSF49493SUPFAM:SSF57938SwissPalm:Q8GWW8
TAIR:AT5G48030tair10-symbols:GFA2UniGene:At.28769UniProt:Q8GWW8
Coordinates (TAIR10) chr5:-:19466298..19469753
Molecular Weight (calculated) 49440.50 Da
IEP (calculated) 9.19
GRAVY (calculated) -0.52
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPSNGAKVL RLLSRRCLSS SLIQDLANQK LRGVCIGSYR RLNTSVGNHA NVIGDYASKS GHDRKWINFG GFNTNFGSTR SFHGTGSSFM SAKDYYSVLG
101: VSKNAQEGEI KKAYYGLAKK LHPDMNKDDP EAETKFQEVS KAYEILKDKE KRDLYDQVGH EAFEQNASGG FPNDQGFGGG GGGGFNPFDI FGSFNGDIFN
201: MYRQDIGGQD VKVLLDLSFM EAVQGCSKTV TFQTEMACNT CGGQGVPPGT KREKCKACNG SGMTSLRRGM LSIQTTCQKC GGAGQTFSSI CKSCRGARVV
301: RGQKSVKVTI DPGVDNSDTL KVARVGGADP EGDQPGDLYV TLKVREDPVF RREGSDIHVD AVLSVTQAIL GGTIQVPTLT GDVVVKVRPG TQPGHKVVLR
401: NKGIRARKST KFGDQYVHFN VSIPANITQR QRELLEEFSK AEQGEYEQRT ATGSSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)