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AT5G47920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G13880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J04XeggNOG:ENOG410YRIUEMBL:AB016886EMBL:AK117194EMBL:CP002688EnsemblPlants:AT5G47920EnsemblPlants:AT5G47920.1
entrez:834843GeneID:834843Gramene:AT5G47920.1hmmpanther:PTHR33450hmmpanther:PTHR33450:SF5HOGENOM:HOG000239093InterPro:IPR008480
KEGG:ath:AT5G47920OMA:DDYLTHSPfam:PF05553PhylomeDB:Q9FII9Proteomes:UP000006548RefSeq:NP_199603.1TAIR:AT5G47920
UniGene:At.29873UniGene:At.67834UniProt:Q9FII9
Coordinates (TAIR10) chr5:-:19403458..19404021
Molecular Weight (calculated) 21520.60 Da
IEP (calculated) 6.59
GRAVY (calculated) -0.73
Length 187 amino acids
Sequence (TAIR10)
(BLAST)
001: MKKATALMKH IVALLSSMAK AKSIAIKNKT SAFKTRVLML SLVKHKKLGF RSISNKIHHL LGHADQDDDN DQDQDKNKAI VLYNSKASTM AHHEEYDVHE
101: EESDKYPDLR HTLFEGEEDF GDLEEEGQGS SVIDMVRTSK EEEGENFKLE DEIDHVADLF ISRFHKQMKL QKLLSFKRYQ EMLARGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)