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AT5G47890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NADH-ubiquinone oxidoreductase B8 subunit, putative
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NADH-ubiquinone oxidoreductase B8 subunit, putative; CONTAINS InterPro DOMAIN/s: Ribosomal protein/NADH dehydrogenase domain (InterPro:IPR007741), NADH dehydrogenase [ubiquinone] (complex I), alpha subcomplex, subunit 2 (InterPro:IPR016464); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20088eggNOG:ENOG41124JVeggNOG:KOG3446EMBL:AB016886EMBL:AY065304EMBL:AY087919EMBL:AY096432
EMBL:CP002688EnsemblPlants:AT5G47890EnsemblPlants:AT5G47890.1entrez:834840Gene3D:3.40.30.10GeneID:834840Genevisible:Q9FIJ2
GO:GO:0005739GO:GO:0005747GO:GO:0055114Gramene:AT5G47890.1hmmpanther:PTHR12878HOGENOM:HOG000201916InParanoid:Q9FIJ2
IntAct:Q9FIJ2InterPro:IPR007741InterPro:IPR012336InterPro:IPR016464KEGG:ath:AT5G47890KO:K03946OMA:SAGTRQF
PANTHER:PTHR12878PaxDb:Q9FIJ2Pfam:PF05047Pfam:Q9FIJ2PhylomeDB:Q9FIJ2PIRSF:PIRSF005822PRIDE:Q9FIJ2
PRO:PR:Q9FIJ2ProteinModelPortal:Q9FIJ2Proteomes:UP000006548RefSeq:NP_199600.1SMART:SM00916SMR:Q9FIJ2STRING:3702.AT5G47890.1
SUPFAM:SSF52833TAIR:AT5G47890TCDB:3.D.1.6.3UniGene:At.20075UniProt:Q9FIJ2
Coordinates (TAIR10) chr5:+:19388806..19390409
Molecular Weight (calculated) 10851.40 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.29
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MAWRGSISKS MKELRILLCQ SSPASAPTRT FVEKNYKDLK SLNPKLPILI RECSGVQPQM WARYDMGVER CVNLDGLTEP QILKALENLV KSGATKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)