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AT5G47780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : galacturonosyltransferase 4
Curator
Summary (TAIR10)
Encodes a protein with putative galacturonosyltransferase activity.
Computational
Description (TAIR10)
galacturonosyltransferase 4 (GAUT4); FUNCTIONS IN: polygalacturonate 4-alpha-galacturonosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: carbohydrate biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: galacturonosyltransferase 1 (TAIR:AT3G61130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:20077CAZy:GT8EC:2.4.1.-eggNOG:ENOG410IGD1eggNOG:ENOG410YBFCEMBL:AB016886EMBL:AY056202
EMBL:AY091394EMBL:CP002688EnsemblPlants:AT5G47780EnsemblPlants:AT5G47780.1entrez:834829ExpressionAtlas:Q93ZX7Gene3D:3.90.550.10
GeneID:834829Genevisible:Q93ZX7GO:GO:0000139GO:GO:0005794GO:GO:0016021GO:GO:0045489GO:GO:0047262
GO:GO:0071555Gramene:AT5G47780.1gramene_pathway:2.4.1.43gramene_pathway:PWY-1061hmmpanther:PTHR32116hmmpanther:PTHR32116:SF7HOGENOM:HOG000239479
InParanoid:Q93ZX7InterPro:IPR002495InterPro:IPR029044InterPro:IPR029993KEGG:00051+2.4.1.-KEGG:00512+2.4.1.-KEGG:00513+2.4.1.-
KEGG:00514+2.4.1.-KEGG:00522+2.4.1.-KEGG:00533+2.4.1.-KEGG:00540+2.4.1.-KEGG:00550+2.4.1.-KEGG:00561+2.4.1.-KEGG:00563+2.4.1.-
KEGG:00600+2.4.1.-KEGG:00601+2.4.1.-KEGG:00603+2.4.1.-KEGG:00604+2.4.1.-KEGG:00906+2.4.1.-KEGG:00908+2.4.1.-KEGG:00941+2.4.1.-
KEGG:00942+2.4.1.-KEGG:00944+2.4.1.-KEGG:00945+2.4.1.-KEGG:00965+2.4.1.-KEGG:ath:AT5G47780KO:K13648ncoils:Coil
OMA:DYYFRAQPANTHER:PTHR32116PaxDb:Q93ZX7Pfam:PF01501Pfam:Q93ZX7PhylomeDB:Q93ZX7PRIDE:Q93ZX7
PRO:PR:Q93ZX7ProteinModelPortal:Q93ZX7Proteomes:UP000006548RefSeq:NP_568688.1STRING:3702.AT5G47780.1SUPFAM:SSF53448TAIR:AT5G47780
tair10-symbols:GAUT4TMHMM:TMhelixUniGene:At.9397UniPathway:UPA00845UniProt:Q93ZX7UniProt:W8PUB8
Coordinates (TAIR10) chr5:+:19347991..19350517
Molecular Weight (calculated) 71153.10 Da
IEP (calculated) 9.26
GRAVY (calculated) -0.46
Length 616 amino acids
Sequence (TAIR10)
(BLAST)
001: MMVKLRNLVL FFMLLTVVAH ILLYTDPAAS FKTPFSKRDF LEDVTALTFN SDENRLNLLP RESPAVLRGG LVGAVYSDKN SRRLDQLSAR VLSATDDDTH
101: SHTDISIKQV THDAASDSHI NRENMHVQLT QQTSEKVDEQ PEPNAFGAKK DTGNVLMPDA QVRHLKDQLI RAKVYLSLPS AKANAHFVRE LRLRIKEVQR
201: ALADASKDSD LPKTAIEKLK AMEQTLAKGK QIQDDCSTVV KKLRAMLHSA DEQLRVHKKQ TMFLTQLTAK TIPKGLHCLP LRLTTDYYAL NSSEQQFPNQ
301: EKLEDTQLYH YALFSDNVLA TSVVVNSTIT NAKHPLKHVF HIVTDRLNYA AMRMWFLDNP PGKATIQVQN VEEFTWLNSS YSPVLKQLSS RSMIDYYFRA
401: HHTNSDTNLK FRNPKYLSIL NHLRFYLPEI FPKLSKVLFL DDDIVVQKDL SGLWSVDLKG NVNGAVETCG ESFHRFDRYL NFSNPLISKN FDPRACGWAY
501: GMNVFDLDEW KRQNITEVYH RWQDLNQDRE LWKLGTLPPG LITFWRRTYP LDRKWHILGL GYNPSVNQRD IERAAVIHYN GNLKPWLEIG IPRYRGFWSK
601: HVDYEHVYLR ECNINP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)