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AT5G47770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31911558 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): cytosol None
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : farnesyl diphosphate synthase 1
Curator
Summary (TAIR10)
Encodes a protein with farnesyl diphosphate synthase activity.
Computational
Description (TAIR10)
farnesyl diphosphate synthase 1 (FPS1); FUNCTIONS IN: dimethylallyltranstransferase activity, geranyltranstransferase activity; INVOLVED IN: farnesyl diphosphate biosynthetic process, isoprenoid biosynthetic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: farnesyl diphosphate synthase 2 (TAIR:AT4G17190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47770-MONOMERBioCyc:MetaCyc:AT5G47770-MONOMEREC:2.5.1.1EC:2.5.1.10
eggNOG:COG0142eggNOG:KOG0711EMBL:AB016886EMBL:AF370324
EMBL:AY063112EMBL:CP002688EMBL:L46367EMBL:U80605
EMBL:X75789EnsemblPlants:AT5G47770EnsemblPlants:AT5G47770.1entrez:834828
Gene3D:1.10.600.10GeneID:834828Genevisible:Q09152GO:GO:0004161
GO:GO:0004337GO:GO:0005739GO:GO:0005829GO:GO:0006695
GO:GO:0033384GO:GO:0045337GO:GO:0046872gramene_pathway:2.5.1.1
gramene_pathway:2.5.1.10gramene_pathway:PWY-5122gramene_pathway:PWY-5123gramene_pathway:PWY2OL-4
gramene_pathway:PWYQT-4449gramene_plant_reactome:1119472gramene_plant_reactome:1119569gramene_plant_reactome:6874078
gramene_plant_reactome:6874586gramene_plant_reactome:6875251gramene_plant_reactome:6875631gramene_plant_reactome:6876607
gramene_plant_reactome:6876688hmmpanther:PTHR11525HOGENOM:HOG000160912InParanoid:Q09152
InterPro:IPR000092InterPro:IPR008949KEGG:ath:AT5G47770KO:K00787
OMA:PQDAVDWPaxDb:Q09152Pfam:PF00348Pfam:Q09152
PhylomeDB:Q09152PIR:S52009PRIDE:Q09152PRO:PR:Q09152
PROSITE:PS00444PROSITE:PS00723ProteinModelPortal:Q09152Proteomes:UP000006548
Reactome:R-ATH-191273Reactome:R-ATH-2426168RefSeq:NP_199588.1scanprosite:PS00444
scanprosite:PS00723SMR:Q09152STRING:3702.AT5G47770.1SUPFAM:SSF48576
TAIR:AT5G47770tair10-symbols:FPS1UniGene:At.21206UniPathway:UPA00259
UniPathway:UPA00260UniProt:Q09152
Coordinates (TAIR10) chr5:+:19345297..19347415
Molecular Weight (calculated) 44263.40 Da
IEP (calculated) 7.01
GRAVY (calculated) -0.24
Length 384 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSCCCRNL GKTIKKAIPS HHLHLRSLGG SLYRRRIQSS SMETDLKSTF LNVYSVLKSD LLHDPSFEFT NESRLWVDRM LDYNVRGGKL NRGLSVVDSF
101: KLLKQGNDLT EQEVFLSCAL GWCIEWLQAY FLVLDDIMDN SVTRRGQPCW FRVPQVGMVA INDGILLRNH IHRILKKHFR DKPYYVDLVD LFNEVELQTA
201: CGQMIDLITT FEGEKDLAKY SLSIHRRIVQ YKTAYYSFYL PVACALLMAG ENLENHIDVK NVLVDMGIYF QVQDDYLDCF ADPETLGKIG TDIEDFKCSW
301: LVVKALERCS EEQTKILYEN YGKPDPSNVA KVKDLYKELD LEGVFMEYES KSYEKLTGAI EGHQSKAIQA VLKSFLAKIY KRQK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)