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AT5G47730.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.890
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Sec14p-like phosphatidylinositol transfer family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Sec14p-like phosphatidylinositol transfer family protein; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251), Cellular retinaldehyde-binding/triple function, N-terminal (InterPro:IPR008273), Phosphatidylinositol transfer protein-like, N-terminal (InterPro:IPR011074); BEST Arabidopsis thaliana protein match is: Sec14p-like phosphatidylinositol transfer family protein (TAIR:AT1G55840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRSQeggNOG:KOG1471EMBL:AB016886EMBL:BT033019
EMBL:CP002688EnsemblPlants:AT5G47730EnsemblPlants:AT5G47730.1entrez:834824
ExpressionAtlas:Q9FIK6Gene3D:3.40.525.10GeneID:834824Gramene:AT5G47730.1
hmmpanther:PTHR23324hmmpanther:PTHR23324:SF79HOGENOM:HOG000241949InterPro:IPR001251
InterPro:IPR011074OMA:SANCFSIPfam:PF00650Pfam:PF03765
Pfscan:PS50191PhylomeDB:Q9FIK6PROSITE:PS50191Proteomes:UP000006548
RefSeq:NP_199584.1SMART:SM00516SMART:SM01100SMR:Q9FIK6
STRING:3702.AT5G47730.1SUPFAM:SSF46938SUPFAM:SSF52087TAIR:AT5G47730
UniGene:At.49141UniGene:At.9393UniProt:Q9FIK6
Coordinates (TAIR10) chr5:-:19334592..19336618
Molecular Weight (calculated) 38863.40 Da
IEP (calculated) 7.40
GRAVY (calculated) -0.40
Length 341 amino acids
Sequence (TAIR10)
(BLAST)
001: MGIVSEEAID EFQELMDQVE EPLKKTYERV HQGYLRENLG RFLKARDWNV CKAHTMLVEC LRWRVDNEID SILSKPIVPT ELYRDVRDSQ LIGMSGYTKE
101: GLPVFAIGVG LSTFDKASVH YYVQSHIQIN EYRDRVLLPS ISKKNGRPIT TCVKVLDMTG LKLSALSQIK LVTIISTIDD LNYPEKTNTY YVVNAPYIFS
201: ACWKVVKPLL QERTRKKVHV LSGCGRDELL KIMDFTSLPH FCRSGSSGSS HHTQSANCFS INHPFHQQLY NYVKHHYETQ GQAEPAKQGS FHVGFPEPEA
301: ERCVIAKTIE SELHKFENRN GLAVSIDDRK SSHETLANGD L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)