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AT5G47720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24130194 (2013): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thiolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thiolase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, acetyl-CoA C-acetyltransferase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase (InterPro:IPR002155), Thiolase, active site (InterPro:IPR020610), Thiolase, N-terminal (InterPro:IPR020616), Thiolase, conserved site (InterPro:IPR020613), Thiolase, C-terminal (InterPro:IPR020617), Thiolase-like, subgroup (InterPro:IPR016038), Thiolase-like (InterPro:IPR016039); BEST Arabidopsis thaliana protein match is: acetoacetyl-CoA thiolase 2 (TAIR:AT5G48230.2); Has 23084 Blast hits to 23069 proteins in 2286 species: Archae - 472; Bacteria - 14683; Metazoa - 981; Fungi - 680; Plants - 248; Viruses - 0; Other Eukaryotes - 6020 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT5G47720EnsemblPlants:AT5G47720.1entrez:834823gramene_pathway:2.3.1.9gramene_pathway:ILEUDEG-PWYgramene_pathway:LYSINE-DEG2-PWYgramene_pathway:PWY-922
gramene_plant_reactome:1119615gramene_plant_reactome:6875138hmmpanther:PTHR18919hmmpanther:PTHR18919:SF105Pfam:PF00108Pfam:PF02803scanprosite:PS00099
scanprosite:PS00737TIGRfam:TIGR01930
Coordinates (TAIR10) chr5:+:19331762..19334009
Molecular Weight (calculated) 42244.00 Da
IEP (calculated) 6.37
GRAVY (calculated) 0.16
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPPVSDDSL QPRDVCVVGV ARTPIGDFLG SLSSLTATRL GSIAIQAALK RAHVDPALVE EVFFGNVLTA NLGQAPARQA ALGAGIPYSV ICTTINKVCA
101: AGMKSVMLAS QSIQLGLNDI VVAGGMESMS NVPKYLPDAR RGSRLGHDTV VDGMMKDGLW DVYNDFGMGV CGEICADQYR ITREEQDAYA IQSFERGIAA
201: QNTQLFAWEI VPVEVSTGRG RPSVVIDKDE GLGKFDAAKL KKLRPSFKED GGSVTAGNAS SISDGAAALV LVSGEKALEL GLHVIAKIRG YADAAQAPEL
301: FTTTPALAIP KAIKRAGLDA SQVDYYEINE AFSVVALANQ KLLGLDPERL NAHGGAVSLG HPLGCSGARI LVTLLGVLRA KKGKYGVASI CNGGGGASAL
401: VLEFM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)