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AT5G47700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 60S acidic ribosomal protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT4G00810.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20069eggNOG:COG2058eggNOG:KOG1762EMBL:AB016886EMBL:AY070049EMBL:AY085303EMBL:AY096430
EMBL:CP002688EnsemblPlants:AT5G47700EnsemblPlants:AT5G47700.1EnsemblPlants:AT5G47700.2entrez:834821GeneID:834821Genevisible:Q8LEQ0
GO:GO:0003735GO:GO:0005634GO:GO:0005829GO:GO:0005886GO:GO:0006414GO:GO:0022626Gramene:AT5G47700.1
Gramene:AT5G47700.2HAMAP:MF_01478hmmpanther:PTHR21141HOGENOM:HOG000229898InParanoid:Q8LEQ0IntAct:Q8LEQ0InterPro:IPR027534
iPTMnet:Q8LEQ0KEGG:ath:AT5G47700KO:K02942OMA:HEVIVMEPaxDb:Q8LEQ0Pfam:PF00428Pfam:Q8LEQ0
PhylomeDB:Q8LEQ0PRIDE:Q8LEQ0PRO:PR:Q8LEQ0ProteinModelPortal:Q8LEQ0Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001078728.1RefSeq:NP_199581.1SMR:Q8LEQ0
STRING:3702.AT5G47700.1TAIR:AT5G47700UniGene:At.9392UniProt:Q8LEQ0
Coordinates (TAIR10) chr5:-:19328019..19328724
Molecular Weight (calculated) 11247.40 Da
IEP (calculated) 4.00
GRAVY (calculated) 0.23
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTVGELACS YAVMILEDEG IAITADKIAT LVKAAGVTIE SYWPMLFAKM AEKRNVTDLI MNVGAGGGGG APVAAAAPAA GGGAAAAAPA AEEKKKDEPA
101: EESDGDLGFG LFD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)