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AT5G47660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MADF domain (InterPro:IPR006578), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G28300.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YYXYeggNOG:KOG4282EMBL:AB025628EMBL:CP002688EnsemblPlants:AT5G47660EnsemblPlants:AT5G47660.1entrez:834817
Gene3D:1.10.10.60GeneID:834817GO:GO:0003677GO:GO:0003700GO:GO:0006355Gramene:AT5G47660.1hmmpanther:PTHR21654
hmmpanther:PTHR21654:SF7HOGENOM:HOG000152459InterPro:IPR001005InterPro:IPR009057InterPro:IPR017877KEGG:ath:AT5G47660ncoils:Coil
OMA:RRWPQEEPfam:PF13837Pfscan:PS50090PhylomeDB:Q9FGJ1PROSITE:PS50090Proteomes:UP000006548RefSeq:NP_199577.1
SMART:SM00717SMR:Q9FGJ1STRING:3702.AT5G47660.1SUPFAM:SSF46689TAIR:AT5G47660UniGene:At.29884UniProt:Q9FGJ1
Coordinates (TAIR10) chr5:+:19313008..19314636
Molecular Weight (calculated) 45577.60 Da
IEP (calculated) 5.94
GRAVY (calculated) -1.01
Length 398 amino acids
Sequence (TAIR10)
(BLAST)
001: MELLAGDCRK RVGDDFEEDI NPFDGSDGGC GWMYGTRQMG SNGNDDALAT LADLASPPQK LKPIRCGVKL PSSSEDRHPL DILAGTLDRL PEMGFGCFEA
101: PLGSKIADVE ESGQLTRGFS KEEDDSLPPL QMEFQARNRI SWDGLSLSSS VDSSDSDSSP DVRKTVTGKR KRETRVKLEH FLEKLVGSMM KRQEKMHNQL
201: INVMEKMEVE RIRREEAWRQ QETERMTQNE EARKQEMARN LSLISFIRSV TGDEIEIPKQ CEFPQPLQQI LPEQCKDEKC ESAQREREIK FRYSSGSGSS
301: GRRWPQEEVQ ALISSRSDVE EKTGINKGAI WDEISARMKE RGYERSAKKC KEKWENMNKY YRRVTEGGQK QPEHSKTRSY FEKLGNFYKT ISSGEREK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)