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AT5G47600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HSP20-like chaperones superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HSP20-like chaperones superfamily protein; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12180.1); Has 101 Blast hits to 101 proteins in 41 species: Archae - 0; Bacteria - 23; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJMUeggNOG:ENOG41119ZAEMBL:AB025628EMBL:BT011590EMBL:BT012229EMBL:CP002688EnsemblPlants:AT5G47600
EnsemblPlants:AT5G47600.1entrez:834810Gene3D:2.60.40.790GeneID:834810Genevisible:Q6NLV0GO:GO:0005737Gramene:AT5G47600.1
HOGENOM:HOG000143351InParanoid:Q6NLV0InterPro:IPR002068InterPro:IPR008978iPTMnet:Q6NLV0KEGG:ath:AT5G47600OMA:NVHFFAD
PaxDb:Q6NLV0Pfam:Q6NLV0Pfscan:PS01031PhylomeDB:Q6NLV0PRIDE:Q6NLV0PRO:PR:Q6NLV0PROSITE:PS01031
ProteinModelPortal:Q6NLV0Proteomes:UP000006548RefSeq:NP_199571.2STRING:3702.AT5G47600.1SUPFAM:SSF49764TAIR:AT5G47600UniGene:At.22233
UniProt:Q6NLV0
Coordinates (TAIR10) chr5:-:19299945..19300456
Molecular Weight (calculated) 14687.50 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.53
Length 131 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRNMEVNAG SSGEIPSPIR NRFQKSGSQA VYEVTETKKS CVTRVDMPGC PESDLTYWVD ANNVHFFADE PAMPEYENAG RKYGGSMIFN PEAYDVKKTK
101: VKLINGVLWI TVPKIPGKNA SINVKERILH Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)