suba logo
AT5G47560.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:12947042 (2003): plant-type vacuole
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tonoplast dicarboxylate transporter
Curator
Summary (TAIR10)
Encodes a tonoplast malate/fumarate transporter.
Computational
Description (TAIR10)
tonoplast dicarboxylate transporter (TDT); CONTAINS InterPro DOMAIN/s: Sodium/sulphate symporter (InterPro:IPR001898); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20054eggNOG:COG0471eggNOG:KOG1281EMBL:AB025628EMBL:AB043024EMBL:AJ223445EMBL:AY072145
EMBL:AY084408EMBL:AY133792EMBL:CP002688EnsemblPlants:AT5G47560EnsemblPlants:AT5G47560.1entrez:834806GeneID:834806
Genevisible:Q8LG88GO:GO:0005773GO:GO:0005774GO:GO:0006814GO:GO:0015140GO:GO:0015743GO:GO:0016021
GO:GO:0051453GO:GO:0071423Gramene:AT5G47560.1hmmpanther:PTHR10283hmmpanther:PTHR10283:SF101HOGENOM:HOG000278432InParanoid:Q8LG88
InterPro:IPR001898KEGG:ath:AT5G47560KO:K14445OMA:CLMIATFPaxDb:Q8LG88Pfam:PF00939Pfam:Q8LG88
PhylomeDB:Q8LG88PRIDE:Q8LG88PRO:PR:Q8LG88ProteinModelPortal:Q8LG88Proteomes:UP000006548Reactome:R-ATH-433137RefSeq:NP_199567.1
STRING:3702.AT5G47560.1TAIR:AT5G47560tair10-symbols:ATSDATtair10-symbols:ATTDTtair10-symbols:TDTTCDB:2.A.47.1.6TIGRfam:TIGR00785
TIGRFAMs:TIGR00785TMHMM:TMhelixUniGene:At.21038UniGene:At.68515UniGene:At.71618UniProt:Q8LG88
Coordinates (TAIR10) chr5:-:19287895..19290347
Molecular Weight (calculated) 58101.50 Da
IEP (calculated) 6.76
GRAVY (calculated) 0.71
Length 540 amino acids
Sequence (TAIR10)
(BLAST)
001: MNGGDVTVAG SDDLKSPLLP VVHNDEPFER QTVGQQLRTI FTPKNCYIAL GPLLCAVVCL CVDLGGDETT TARNMLGVLV WMFAWWLTEA VPMPITSMTP
101: LFLFPLFGIS AADDVANSYM DDVISLVLGS FILALAVEHY NIHRRLALNI TLVFCVEPLN APLLLLGICA TTAFVSMWMH NVAAAVMMMP VATGILQRLP
201: SSSSTTEVVH PAVGKFSRAV VLGVIYSAAV GGMSTLTGTG VNLILVGMWK SYFPEADPIS FSQWFFFGFP LALCIFVVLW CVLCVMYCPK GAGQALSPYL
301: HKSHLRRELD LLGPMNFAEK MVLAVFGGLV VLWMTRNITD DIPGWGRIFA GRAGDGTVSV MMATLLFIIP SNIKKGEKLM DWNKCKKLPW NIVLLLGAGF
401: AIADGVRTSG LAEVLSKGLV FLETAPYWAI APTVCLIAAT ITEFTSNNAT TTLLVPLLIE IAKNMGIHPL LLMVPGAIGA QFAFLLPTGT PSNVVGFTTG
501: HIEIKDMIKT GLPLKIAGTI FLSILMPTLG AYVFASMGGV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)