AT5G47490.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.929 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RGPR-related | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RGPR-related; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: RGPR-related (TAIR:AT5G47480.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19264675..19270487 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 147824.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.62 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1361 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASASQFLLE DQTDEDFFDK LVDDAYSPTE AQASSSVTEL KFDDESDSDD IRAFSNLSIG KDPLGGGDGT LNEAILGNDV ANEGASGSVG EDEPSSIAPE 0101: AVQFPHSDAR ELRDDEMRSE VADMPLSETA KECTIVNEPG IPGVKELDWG SFDADLSVND GRGFGSYSDF FTELDATAGN LQGKADVAVA TGGNLVANDT 0201: NNTSVGFEQH QGQLHHDSAS GQYVDNSQSW ENLYPGWKYD ASTGQWFQVD GHDASMNSQE SYENSTSNWE NVAANNSDVA YQRQSTASAV AGTVENVSTW 0301: NQVSQVSNGY PEHMVFDSQY PGWYYDTIAQ EWRSLDSYNQ AFQTTGQAND QQVQNGNSFT AVDHSRESNV HDVYDKNQIL RTQKFDIQSQ HGSWDQSYYD 0401: KNQQATNMWQ PENAGAAEAA VTPASLSNSG GNQQVNNLYS TGPVAEQFKP YESGVQSFIP QHMNVANVTQ NGPMSFSNGF YSRQESVDDA PQSFQSSQLF 0501: SPSAGRSSDG RPPHALVNFG FGGKLILMKD DSGSLQNSSF GSQKGTGGSS ISVLNLAEVI SGSASYSSLG ENSLSYFSCL DQQSLPGPLV GGNVGSKDLH 0601: KWLDERILNC ESSYMDFSRG KLLKMLLSLL RISCQYYGKL RSPFGSDALQ KETDSAEAAV AKLFAIAKED GVQNGYAPIS QCLQHLPPES QMQVTASEVQ 0701: NLLASGRKME ALQCAQEGHL WGPALVIAAQ LGQQFYVDTV KQMALRQLVP GSPLRTLCLL VAGQPAEVFS TGSTSDISFP GSVNLPPQQP QFGCSSMLDS 0801: WEENLGIITA NRTTDDELVI THLGDCMWKE RGEIIAAHIC YLIADKNFDT YSDTARLCLV GADHWKYPRT YASPEAIQRT ELYEYSKTLG NSQYTLLTFQ 0901: PYKVMYAHML AEVGKLSTAQ KYCQAVLKCL KTGRSPEVEM WKQFVSSLEE RIRIHQQGGY TANLHPEKLV GVLLNFFGSK THRPVGGMPP PAPHSTKGNL 1001: QGNEYQHQQQ EATKLAYSQS VNTMSSLMPP ASVEPTHESG GSGRRMAVHT RSVSEPDFGR TPIQEMADSS KEKAVDGVTK LKSSGSVAGS RFSRFGFGIF 1101: KDTVGRVLAR SSKEAKLGAE NQFYYDDKLK RWVERGVEPP AEEAALPPPP TIGAFQNNSL GYENKSDMIP SNGNWSSGGP TPSENSSGIP PISHGSNQFS 1201: ARGRTGVRAR YVDTYNPPGR GNSHTMIPSP SVQTAKPPIP AKAKFFVPAA PASFSNDQAM EPAAAETRQE EISADEVVAS SGAPPPMMMQ RYPSMDNIQR 1301: NGLGISVNGD NHQPPTSRRT ASWSGNFNTS FTPPTSPSTF KPVLLNSSSS SLGEELQEVE L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)