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AT5G47435.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : formyltetrahydrofolate deformylase, putative
Curator
Summary (TAIR10)
encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle.
Computational
Description (TAIR10)
formyltetrahydrofolate deformylase, putative; FUNCTIONS IN: hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity; INVOLVED IN: tetrahydrofolate metabolic process, purine ribonucleotide biosynthetic process, biosynthetic process, photorespiration; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Formyltetrahydrofolate deformylase (InterPro:IPR004810), Formyl transferase, N-terminal (InterPro:IPR002376); BEST Arabidopsis thaliana protein match is: Formyl transferase (TAIR:AT4G17360.1); Has 14552 Blast hits to 14552 proteins in 2615 species: Archae - 121; Bacteria - 10332; Metazoa - 171; Fungi - 86; Plants - 154; Viruses - 3; Other Eukaryotes - 3685 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47435-MONOMERBioCyc:ARA:GQT-82-MONOMERBioGrid:20039EC:3.5.1.10
eggNOG:COG0788eggNOG:ENOG410IQK3EMBL:AB018117EMBL:AK117593
EMBL:AY059833EMBL:AY081459EMBL:CP002688EnsemblPlants:AT5G47435
EnsemblPlants:AT5G47435.1EnsemblPlants:AT5G47435.2entrez:834791Gene3D:3.40.50.170
GeneID:834791Genevisible:Q93YQ3GO:GO:0005739GO:GO:0006189
GO:GO:0006730GO:GO:0008864GO:GO:0009853GO:GO:0016742
GO:GO:0046653Gramene:AT5G47435.1Gramene:AT5G47435.2gramene_pathway:2.1.2.2
gramene_pathway:PWY-6121hmmpanther:PTHR10520hmmpanther:PTHR10520:SF7HOGENOM:HOG000033576
InParanoid:Q93YQ3IntAct:Q93YQ3InterPro:IPR002376InterPro:IPR004810
iPTMnet:Q93YQ3KEGG:00630+3.5.1.10KEGG:00670+2.1.2.9KEGG:00670+3.5.1.10
KEGG:00970+2.1.2.9KEGG:ath:AT5G47435KO:K01433OMA:NNVFYSR
PANTHER:PTHR10520:SF7PaxDb:Q93YQ3Pfam:PF00551Pfam:Q93YQ3
PhylomeDB:Q93YQ3PRIDE:Q93YQ3PRINTS:PR01575PRO:PR:Q93YQ3
ProteinModelPortal:Q93YQ3Proteomes:UP000006548RefSeq:NP_568682.1RefSeq:NP_851145.1
SMR:Q93YQ3STRING:3702.AT5G47435.1SUPFAM:SSF53328SUPFAM:SSF55021
TAIR:AT5G47435UniGene:At.22699unipathway:UPA00074UniProt:Q93YQ3
Coordinates (TAIR10) chr5:+:19241779..19243424
Molecular Weight (calculated) 36453.90 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.20
Length 323 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRRITERAS GFAKNIPILK SSRFHGESLD SSVSPVLIPG VHVFHCQDAV GIVAKLSDCI AAKGGNILGY DVFVPENNNV FYSRSEFIFD PVKWPRSQVD
101: EDFQTIAQRY GALNSVVRVP SIDPKYKIAL LLSKQDHCLV EMLHKWQDGK LPVDITCVIS NHERASNTHV MRFLERHGIP YHYVSTTKEN KREDDILELV
201: KDTDFLVLAR YMQILSGNFL KGYGKDVINI HHGLLPSFKG GYPAKQAFDA GVKLIGATSH FVTEELDSGP IIEQMVESVS HRDNLRSFVQ KSEDLEKKCL
301: TRAIKSYCEL RVLPYGTNKT VVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)