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AT5G47360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.681
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G12775.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB018117EMBL:CP002688EnsemblPlants:AT5G47360EnsemblPlants:AT5G47360.1entrez:834783
GeneID:834783Genevisible:Q9LVS3Gramene:AT5G47360.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF719HOGENOM:HOG000115645InParanoid:Q9LVS3
InterPro:IPR002885KEGG:ath:AT5G47360OMA:ADTVAYNPaxDb:Q9LVS3Pfam:PF01535Pfam:PF13041Pfam:Q9LVS3
Pfscan:PS51375PhylomeDB:Q9LVS3PRIDE:Q9LVS3PRO:PR:Q9LVS3PROSITE:PS51375ProteinModelPortal:Q9LVS3Proteomes:UP000006548
RefSeq:NP_199547.1SMR:Q9LVS3STRING:3702.AT5G47360.1TAIR:AT5G47360TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.49137
UniGene:At.66792UniProt:Q9LVS3
Coordinates (TAIR10) chr5:-:19214445..19215878
Molecular Weight (calculated) 53786.80 Da
IEP (calculated) 7.44
GRAVY (calculated) -0.04
Length 477 amino acids
Sequence (TAIR10)
(BLAST)
001: MPNSLISRLV SPSLRSQPSK ISALRFLTTV SAAERLYGQL QGCTSNLEKE LASANVQLDS SCINEVLRRC DPNQFQSGLR FFIWAGTLSS HRHSAYMYTK
101: ACDILKIRAK PDLIKYVIES YRKEECFVNV KTMRIVLTLC NQANLADEAL WVLRKFPEFN VCADTVAYNL VIRLFADKGD LNIADMLIKE MDCVGLYPDV
201: ITYTSMINGY CNAGKIDDAW RLAKEMSKHD CVLNSVTYSR ILEGVCKSGD MERALELLAE MEKEDGGGLI SPNAVTYTLV IQAFCEKRRV EEALLVLDRM
301: GNRGCMPNRV TACVLIQGVL ENDEDVKALS KLIDKLVKLG GVSLSECFSS ATVSLIRMKR WEEAEKIFRL MLVRGVRPDG LACSHVFREL CLLERYLDCF
401: LLYQEIEKKD VKSTIDSDIH AVLLLGLCQQ GNSWEAAKLA KSMLDKKMRL KVSHVEKIIE ALKKTGDEDL MSRFSID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)