suba logo
AT5G47310.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.508
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : PPPDE putative thiol peptidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PPPDE putative thiol peptidase family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: PPPDE putative thiol peptidase family protein (TAIR:AT4G17486.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111H3ZeggNOG:KOG0324EMBL:AB018117EMBL:AK227459EMBL:BT005996EMBL:CP002688EnsemblPlants:AT5G47310
EnsemblPlants:AT5G47310.1entrez:834778GeneID:834778Gramene:AT5G47310.1hmmpanther:PTHR12378hmmpanther:PTHR12378:SF19HOGENOM:HOG000241907
IntAct:Q9LVS8InterPro:IPR008580KEGG:00261+3.4.-.-KEGG:00310+3.4.-.-KEGG:00550+3.4.-.-KEGG:00780+3.4.-.-KEGG:ath:AT5G47310
MEROPS:C97.A03OMA:HHLITAPPfam:PF05903PhylomeDB:Q9LVS8Proteomes:UP000006548RefSeq:NP_199542.1SMART:SM01179
SMR:Q9LVS8STRING:3702.AT5G47310.1TAIR:AT5G47310UniGene:At.29900UniProt:Q9LVS8
Coordinates (TAIR10) chr5:+:19201325..19202674
Molecular Weight (calculated) 27413.80 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.42
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)