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AT5G47250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.903
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : LRR and NB-ARC domains-containing disease resistance protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LRR and NB-ARC domains-containing disease resistance protein; FUNCTIONS IN: ATP binding; INVOLVED IN: apoptosis, defense response; LOCATED IN: mitochondrion; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT1G12220.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG4658EMBL:AB018117EMBL:AK226756EMBL:CP002688EnsemblPlants:AT5G47250EnsemblPlants:AT5G47250.1
entrez:834772Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834772Genevisible:Q9LVT4GO:GO:0005524GO:GO:0005739
GO:GO:0006952GO:GO:0043531Gramene:AT5G47250.1hmmpanther:PTHR23155hmmpanther:PTHR23155:SF639HOGENOM:HOG000238348InParanoid:Q9LVT4
InterPro:IPR001611InterPro:IPR002182InterPro:IPR027417InterPro:IPR032675iPTMnet:Q9LVT4KEGG:ath:AT5G47250ncoils:Coil
OMA:MRANEDIPaxDb:Q9LVT4Pfam:PF00931Pfam:PF13855Pfam:Q9LVT4Pfscan:PS51450PhylomeDB:Q9LVT4
PRIDE:Q9LVT4PRO:PR:Q9LVT4PROSITE:PS51450ProteinModelPortal:Q9LVT4Proteomes:UP000006548RefSeq:NP_199536.1SMR:Q9LVT4
STRING:3702.AT5G47250.1SUPFAM:SSF52058SUPFAM:SSF52540TAIR:AT5G47250UniGene:At.29906UniProt:Q9LVT4
Coordinates (TAIR10) chr5:-:19186045..19188576
Molecular Weight (calculated) 94806.70 Da
IEP (calculated) 5.58
GRAVY (calculated) -0.12
Length 843 amino acids
Sequence (TAIR10)
(BLAST)
001: MNCCWQVVEP CYKSALSYLC VKVGNICMLK ENLVLLKSAF DELKAEKEDV VNRVNAGELK GGQRLAIVAT WLSQVEIIEE NTKQLMDVAS ARDASSQNAS
101: AVRRRLSTSG CWFSTCNLGE KVFKKLTEVK SLSGKDFQEV TEQPPPPVVE VRLCQQTVGL DTTLEKTWES LRKDENRMLG IFGMGGVGKT TLLTLINNKF
201: VEVSDDYDVV IWVESSKDAD VGKIQDAIGE RLHICDNNWS TYSRGKKASE ISRVLRDMKP RFVLLLDDLW EDVSLTAIGI PVLGKKYKVV FTTRSKDVCS
301: VMRANEDIEV QCLSENDAWD LFDMKVHCDG LNEISDIAKK IVAKCCGLPL ALEVIRKTMA SKSTVIQWRR ALDTLESYRS EMKGTEKGIF QVLKLSYDYL
401: KTKNAKCFLY CALFPKAYYI KQDELVEYWI GEGFIDEKDG RERAKDRGYE IIDNLVGAGL LLESNKKVYM HDMIRDMALW IVSEFRDGER YVVKTDAGLS
501: QLPDVTDWTT VTKMSLFNNE IKNIPDDPEF PDQTNLVTLF LQNNRLVDIV GKFFLVMSTL VVLDLSWNFQ ITELPKGISA LVSLRLLNLS GTSIKHLPEG
601: LGVLSKLIHL NLESTSNLRS VGLISELQKL QVLRFYGSAA ALDCCLLKIL EQLKGLQLLT VTVNNDSVLE EFLGSTRLAG MTQGIYLEGL KVSFAAIGTL
701: SSLHKLEMVN CDITESGTEW EGKRRDQYSP STSSSEITPS NPWFKDLSAV VINSCIHLKD LTWLMYAANL ESLSVESSPK MTELINKEKA QGVGVDPFQE
801: LQVLRLHYLK ELGSIYGSQV SFPKLKLNKV DIENCPNLHQ RPL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)