AT5G47110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chlorophyll A-B binding family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chlorophyll A-B binding family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosynthesis, light harvesting; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Chlorophyll A-B binding family protein (TAIR:AT4G17600.1); Has 86 Blast hits to 86 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:19134218..19135238 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28602.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.68 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||||||||||
| Length | 258 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSISMALFSP PISSSLQNPN LIPKISTSLL STKRFSLISV PRASSDNGTT SPVVEIPKPA SVAVEEVPVK SPAESSSASE NGAVGGEATD SSTETVIKYQ 101: NAKWVNGTWD LKQFEKDGKT DWDSVIVSEA KRRKWLEDNP ETTSNDELVV FDTSIIPWWA WMKRYHLPEA ELLNGRAAMI GFFMAYFVDS LTGVGLVDQM 201: GNFFCKTLLF VAVAGVLFIR KNEDLDKLKD LFDETTLYDK QWQAAWKEPD SSTVSSKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)