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AT5G47090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111QQ2eggNOG:KOG3044EMBL:AB025609EMBL:AF410275EMBL:AY093720EMBL:CP002688EnsemblPlants:AT5G47090
EnsemblPlants:AT5G47090.1entrez:834755GeneID:834755Gramene:AT5G47090.1hmmpanther:PTHR31840HOGENOM:HOG000241681InterPro:IPR018613
KEGG:ath:AT5G47090ncoils:CoilOMA:LMHTLEKPfam:PF09747PhylomeDB:Q9LTB9Proteomes:UP000006548RefSeq:NP_568676.1
STRING:3702.AT5G47090.1TAIR:AT5G47090UniGene:At.9738UniProt:Q9LTB9
Coordinates (TAIR10) chr5:+:19127274..19128493
Molecular Weight (calculated) 36399.10 Da
IEP (calculated) 4.26
GRAVY (calculated) -1.07
Length 310 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKKKTMEM EATTMKGTAA EDITERLSSL DNLYFPRAVQ LTAASSDQRK SILLDLLRRD PAVFLERYGS ELLVDELLEF DAMKHDYEVD WHLKNLRKKI
101: SPTSEEIKSR SVAVRNRRLA YLNKLVSEGQ YFSEDAMRDR EPYLHHEYVG KFQDVMGRNM ARPGERWSET LMRRAEEAVL VTRIREEQQR LGVSESDWVG
201: NEKMEESEEE EEEESEEEEE EEDEEAKNPT EASSSSLNGK EQKEKATTVL PPEEMQDMMD QFTSIMEQKF LSGEDHQHLD YAKIDNDETL DDHWLREIGR
301: DAEDKYFDED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)