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AT5G47080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.953
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : casein kinase II beta chain 1
Curator
Summary (TAIR10)
Regulatory subunit beta of casein kinase II. purified CKB1 resulted in up 100-fold stimulation of casein kinase activity compared with the CKA1 activity alone. Forms a tetrameric complex with CKA1 (CKA1(2)CKB1(2)).
Computational
Description (TAIR10)
casein kinase II beta chain 1 (CKB1); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta chain 2 (TAIR:AT4G17640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:20002eggNOG:COG5041eggNOG:KOG3092EMBL:AB025609EMBL:CP002688EMBL:L22563EnsemblPlants:AT5G47080
EnsemblPlants:AT5G47080.1entrez:834754ExpressionAtlas:P40228Gene3D:1.10.1820.10Gene3D:2.20.25.20GeneID:834754Genevisible:P40228
GO:GO:0005956GO:GO:0006468GO:GO:0019887GO:GO:0071900hmmpanther:PTHR11740hmmpanther:PTHR11740:SF4HOGENOM:HOG000039270
InParanoid:P40228IntAct:P40228InterPro:IPR000704InterPro:IPR016149InterPro:IPR016150OMA:DETGWIQPANTHER:PTHR11740
PaxDb:P40228Pfam:P40228Pfam:PF01214PhylomeDB:P40228PIR:S47967PRIDE:P40228PRINTS:PR00472
PRO:PR:P40228PROSITE:PS01101ProteinModelPortal:P40228Proteomes:UP000006548Reactome:R-ATH-2514853RefSeq:NP_199519.1scanprosite:PS01101
SMART:SM01085SMR:P40228STRING:3702.AT5G47080.1SUPFAM:0047698SUPFAM:SSF57798TAIR:AT5G47080tair10-symbols:CKB1
UniGene:At.23955UniProt:P40228
Coordinates (TAIR10) chr5:-:19124969..19126397
Molecular Weight (calculated) 32356.60 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.62
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MYRDRGTVNS RPEVVDRKRI NDALERPSPS TSRQVNGKGK GTVTAATTTA NLIGKQQSNN INHRDSRSAS LSKNNTVSDD ESDTDSEESD VSGSDGEDTS
101: WISWFCNLRG NEFFCEVDDD YIQDDFNLCG LSSLVPYYEY ALDLILDVES SQGEMFTEEQ NELIESAAEM LYGLIHARYI LTSKGLAAML DKYKNYDFGR
201: CPRVYCCGQP CLPVGQSDLP RSSTVKIYCP KCEDIYYPRS KYQGNIDGAY FGTTFPHLFL MTYGHLKPAK ATQNYVQRVF GFKLHKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)