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AT5G47010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.685
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RNA helicase, putative
Curator
Summary (TAIR10)
Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.
Computational
Description (TAIR10)
LOW-LEVEL BETA-AMYLASE 1 (LBA1); FUNCTIONS IN: in 6 functions; INVOLVED IN: sugar mediated signaling pathway, RNA interference, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, response to sucrose stimulus; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Restriction endonuclease, type I, R subunit/Type III, Res subunit (InterPro:IPR006935), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), RNA helicase UPF1, UPF2-interacting domain (InterPro:IPR018999); BEST Arabidopsis thaliana protein match is: DNA-binding protein, putative (TAIR:AT2G03270.1); Has 9640 Blast hits to 8330 proteins in 1330 species: Archae - 182; Bacteria - 2840; Metazoa - 3001; Fungi - 1369; Plants - 807; Viruses - 148; Other Eukaryotes - 1293 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G47010-MONOMERBioGrid:19995EC:3.6.4.-eggNOG:COG1112eggNOG:KOG1802EMBL:AB013394EMBL:AF484122
EMBL:CP002688EnsemblPlants:AT5G47010EnsemblPlants:AT5G47010.1entrez:834747Gene3D:3.40.50.300GeneID:834747Genevisible:Q9FJR0
GO:GO:0000184GO:GO:0000932GO:GO:0003677GO:GO:0003723GO:GO:0004386GO:GO:0005524GO:GO:0005737
GO:GO:0005829GO:GO:0005886GO:GO:0008270GO:GO:0009506GO:GO:0009611GO:GO:0009863GO:GO:0009867
GO:GO:0010182GO:GO:0042742GO:GO:0048571Gramene:AT5G47010.1hmmpanther:PTHR10887hmmpanther:PTHR10887:SF378HOGENOM:HOG000205990
InParanoid:Q9FJR0InterPro:IPR014001InterPro:IPR018999InterPro:IPR027417iPTMnet:Q9FJR0KEGG:ath:AT5G47010KO:K14326
ncoils:CoilOMA:HDSIGYIPaxDb:Q9FJR0Pfam:PF09416Pfam:PF13086Pfam:PF13087Pfam:PF13245
Pfam:Q9FJR0Pfscan:PS51192PhylomeDB:Q9FJR0PRIDE:Q9FJR0PRO:PR:Q9FJR0PROSITE:PS51192ProteinModelPortal:Q9FJR0
Proteomes:UP000006548Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_199512.2SMR:Q9FJR0STRING:3702.AT5G47010.1SUPFAM:SSF52540
TAIR:AT5G47010tair10-symbols:ATUPF1tair10-symbols:LBA1tair10-symbols:UPF1UniGene:At.8584UniProt:Q9FJR0
Coordinates (TAIR10) chr5:+:19072009..19078856
Molecular Weight (calculated) 136876.00 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.45
Length 1254 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDSQQSDLFD TASQPDTVAD EYTFLEFNTQ GDSEFDYQDF GSPTAWPTPS DSISIADVAD RGEGGAAADH HSEASSPSSL SAGAGNGAKV GRGGVGGSGG
0101: VSSSSQVDAL AAGVGNLNFE ETGDDDGFDY GKNDFTEHAC KYCGISNPAC VVRCNVASCR KWFCNSRGNT SGSHIVNHLV RAKHKEVCLH RDSPLGETIL
0201: ECYNCGCRNV FLLGFISAKT DSVVVLLCRD PCLNVNALKD MNWDLSQWCP LIDDRCFLPW LVKVPSEQEQ LRARQISAQQ INKIEELWKT NPDATLEDLE
0301: KPGVDDEPQP VQPKYEDAYQ YQNVFAPLIK LEADYDKMMK ESQSKENLTV RWDIGLNKKR VAYFVFPKEE NELRLVPGDE LRLRYSGDAV HPSWQSVGHV
0401: IKLTAQEEVA LELRANQGVP IDVNHGFSVD FVWKSTSFDR MQGAMKNFAV DETSVSGYIY HQLLGHEVEA QMVRNTLPRR FGVPGLPELN ASQVNAVKSV
0501: LQKPISLIQG PPGTGKTVTS AAIVYHMAKQ GQGQVLVCAP SNVAVDQLAE KISATGLKVV RLCAKSREAV SSPVEYLTLH YQVRHLDTSE KSELHKLQQL
0601: KDEQGELSSS DEKKYKNLKR ATEREITQSA DVICCTCVGA ADLRLSNFRF RQVLIDESTQ ATEPECLIPL VLGVKQVVLV GDHCQLGPVI MCKKAARAGL
0701: AQSLFERLVT LGIKPIRLQV QYRMHPALSE FPSNSFYEGT LQNGVTIIER QTTGIDFPWP VPNRPMFFYV QLGQEEISAS GTSYLNRTEA ANVEKLVTAF
0801: LKSGVVPSQI GVITPYEGQR AYIVNYMARN GSLRQQLYKE IEVASVDSFQ GREKDYIILS CVRSNEHQGI GFLNDPRRLN VALTRARYGI VILGNPKVLS
0901: KQPLWNGLLT HYKEHECLVE GPLNNLKQSM VQFQKPRKIY NDRRLFYGGG AGMIGNDNFG SGNPNADRRG SRGRAGGSYL PSGPPNGARP GLHPAGYPIP
1001: RVPLSPFPGG PPSQPYAIPT RGPVGAVPHA PQPGNHGFGA GRGTSVGGHL PHQQATQHNV GTIGPSLNFP LDSPNSQPSP GGPLSQPGYG SQAFRDGFSM
1101: GGISQDFLAD DIKSQGSHDP YNMADFATQA SPGGFAVDYA TQGAHGAFPG NFMNQNSQGG YSRFSGINDF MSQEYMAHGG QGLFTQAGFI DSSQDDGQQN
1201: PYGVNNPNLQ SQGLPNSLYS QPFAHYNTQP LNLSGPQQSQ PNQSSQNPKH PYNG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)