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AT5G46910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: relative of early flowering 6 (TAIR:AT3G48430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410ISPJeggNOG:ENOG41104I0EMBL:CP002688EnsemblPlants:AT5G46910EnsemblPlants:AT5G46910.1entrez:834736GeneID:834736
Gramene:AT5G46910.1hmmpanther:PTHR10694hmmpanther:PTHR10694:SF33InParanoid:F4KIX0InterPro:IPR003347InterPro:IPR003349InterPro:IPR004198
iPTMnet:F4KIX0KEGG:ath:AT5G46910OMA:SKEARNGPaxDb:F4KIX0Pfam:PF02373Pfam:PF02375Pfam:PF02928
Pfscan:PS51183Pfscan:PS51184PRIDE:F4KIX0PROSITE:PS51183PROSITE:PS51184ProteinModelPortal:F4KIX0Proteomes:UP000006548
RefSeq:NP_199502.2SMART:SM00545SMART:SM00558SMR:F4KIX0STRING:3702.AT5G46910.1SUPFAM:SSF51197TAIR:AT5G46910
UniGene:At.55411UniProt:F4KIX0
Coordinates (TAIR10) chr5:+:19046888..19050880
Molecular Weight (calculated) 88825.40 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.46
Length 787 amino acids
Sequence (TAIR10)
(BLAST)
001: MAERRICLSK EAKDGLEFLK RKKLQKMRSD SVNETVGFST MARSGGDALR PTSASCGMRL RVTSSDTVSK VHGASTVRGG LMKEKVEKLE TDDLKWTERL
101: PECPVYRPTK EEFEDPLTYL QKIFPEASKY GICKIVSPLT ATVPAGAVLM KEKSNFKFTT RVQPLRLAEW DSDDKVTFFM SGRTYTFRDY EKMANKVFAR
201: RYCSGGSLPD SFLEKEFWKE IACGKTETVE YACDVDGSAF SSAPGDPLGS SKWNLNKVSR LPKSTLRLLE TSIPGVTEPM LYIGMLFSMF AWHVEDHYLY
301: SINYQHCGAS KTWYGIPGSA ALKFEKVVKE CVYNDDILST NGEDGAFDVL LGKTTIFPPK TLLDHNVPVY KAVQKPGEFV VTFPRAYHAG FSHGFNCGEA
401: VNFAMGDWFP FGAIASCRYA HLNRVPLLPH EELICKEAML LNSSSKSENL DLTPTELSGQ RSIKTAFVHL IRFLHLARWS LMKSGLCTGL VSNTYGTIVC
501: SLCKRDCYLA FINCECYSHP VCLRHDVKKL DLPCGTTHTL YLRDNIEDME AAAMKFEKED GVSDLITTDE DLYKYPSSIT LPAAKEDGYT PYSTIYFDFY
601: TEVEMTSHDQ LQSGNPVMSY EANASCISSV ADDYECSDYV NRRANCSSSS DSKLSEEVAC SSSKKTRFFP VVQDEQLVAD QESDGSDSEC FRVKRRSSLK
701: FENRTVVLDT RESDHHQELK RLKKSHHHEG RYSSSSSVSR QEEEEDELVI SNRKETQQQS DVKMQKKRIE NHFGGFKRLK VKGLIKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)