AT5G46910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to chitin, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, C5HC2-type (InterPro:IPR004198), Transcription factor jumonji (InterPro:IPR013129), Transcription factor jumonji, JmjN (InterPro:IPR003349); BEST Arabidopsis thaliana protein match is: relative of early flowering 6 (TAIR:AT3G48430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:19046888..19050880 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88825.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||
| Length | 787 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAERRICLSK EAKDGLEFLK RKKLQKMRSD SVNETVGFST MARSGGDALR PTSASCGMRL RVTSSDTVSK VHGASTVRGG LMKEKVEKLE TDDLKWTERL 101: PECPVYRPTK EEFEDPLTYL QKIFPEASKY GICKIVSPLT ATVPAGAVLM KEKSNFKFTT RVQPLRLAEW DSDDKVTFFM SGRTYTFRDY EKMANKVFAR 201: RYCSGGSLPD SFLEKEFWKE IACGKTETVE YACDVDGSAF SSAPGDPLGS SKWNLNKVSR LPKSTLRLLE TSIPGVTEPM LYIGMLFSMF AWHVEDHYLY 301: SINYQHCGAS KTWYGIPGSA ALKFEKVVKE CVYNDDILST NGEDGAFDVL LGKTTIFPPK TLLDHNVPVY KAVQKPGEFV VTFPRAYHAG FSHGFNCGEA 401: VNFAMGDWFP FGAIASCRYA HLNRVPLLPH EELICKEAML LNSSSKSENL DLTPTELSGQ RSIKTAFVHL IRFLHLARWS LMKSGLCTGL VSNTYGTIVC 501: SLCKRDCYLA FINCECYSHP VCLRHDVKKL DLPCGTTHTL YLRDNIEDME AAAMKFEKED GVSDLITTDE DLYKYPSSIT LPAAKEDGYT PYSTIYFDFY 601: TEVEMTSHDQ LQSGNPVMSY EANASCISSV ADDYECSDYV NRRANCSSSS DSKLSEEVAC SSSKKTRFFP VVQDEQLVAD QESDGSDSEC FRVKRRSSLK 701: FENRTVVLDT RESDHHQELK RLKKSHHHEG RYSSSSSVSR QEEEEDELVI SNRKETQQQS DVKMQKKRIE NHFGGFKRLK VKGLIKP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)