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AT5G46880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homeobox-7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
homeobox-7 (HB-7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeobox, conserved site (InterPro:IPR017970), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 4 (TAIR:AT4G17710.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IH8KeggNOG:ENOG410YCQUEMBL:AB013394EMBL:BX841652
EMBL:CP002688EnsemblPlants:AT5G46880EnsemblPlants:AT5G46880.1entrez:834733
Gene3D:1.10.10.60GeneID:834733Genevisible:Q9FJS2GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0008289GO:GO:0043565
Gramene:AT5G46880.1hmmpanther:PTHR24326hmmpanther:PTHR24326:SF267HOGENOM:HOG000243256
InParanoid:Q9FJS2InterPro:IPR001356InterPro:IPR002913InterPro:IPR009057
InterPro:IPR017970KEGG:ath:AT5G46880ncoils:CoilOMA:ELMLQES
PaxDb:Q9FJS2Pfam:PF00046Pfam:PF01852Pfam:Q9FJS2
Pfscan:PS50071Pfscan:PS50848PhylomeDB:Q9FJS2PRIDE:Q9FJS2
PRO:PR:Q9FJS2PROSITE:PS00027PROSITE:PS50071PROSITE:PS50848
ProteinModelPortal:Q9FJS2Proteomes:UP000006548RefSeq:NP_199499.3scanprosite:PS00027
SMART:SM00234SMART:SM00389SMR:Q9FJS2SUPFAM:SSF46689
SUPFAM:SSF55961TAIR:AT5G46880tair10-symbols:HB-7tair10-symbols:HDG5
UniGene:At.50511UniProt:Q9FJS2
Coordinates (TAIR10) chr5:+:19031540..19035388
Molecular Weight (calculated) 92125.60 Da
IEP (calculated) 5.20
GRAVY (calculated) -0.38
Length 826 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTMGEGNVM TSNNRFASPP QQPSSSSPGT IQNPNFNFIP FNSYSSIIPK EEHGMMSMMM MMGDGTVEEM MENGSAGGSF GSGSEQAEDP KFGNESDVNE
101: LHDDEQPPPA KKKRYHRHTN RQIQEMEALF KENPHPDDKQ RKRLSAELGL KPRQVKFWFQ NRRTQMKAQQ DRNENVMLRA ENDNLKSENC HLQAELRCLS
201: CPSCGGPTVL GDIPFNEIHI ENCRLREELD RLCCIASRYT GRPMQSMPPS QPLINPSPML PHHQPSLELD MSVYAGNFPE QSCTDMMMLP PQDTACFFPD
301: QTANNNNNNN MLLADEEKVI AMEFAVSCVQ ELTKMCDTEE PLWIKKKSDK IGGEILCLNE EEYMRLFPWP MENQNNKGDF LREASKANAV VIMNSITLVD
401: AFLNADKWSE MFCSIVARAK TVQIISSGVS GASGSLLLMF AELQVLSPLV PTREAYFLRY VEQNAETGNW AIVDFPIDSF HDQMQPMNTI THEYKRKPSG
501: CIIQDMPNGY SQVKWVEHVE VDEKHVHETF AEYVKSGMAF GANRWLDVLQ RQCERIASLM ARNITDLGVI SSAEARRNIM RLSQRLVKTF CVNISTAYGQ
601: SWTALSETTK DTVRITTRKM CEPGQPTGVV LCAVSTTWLP FSHHQVFDLI RDQHHQSLLE VLFNGNSPHE VAHIANGSHP GNCISLLRIN VASNSWHNVE
701: LMLQESCIDN SGSLIVYSTV DVDSIQQAMN GEDSSNIPIL PLGFSIVPVN PPEGISVNSH SPPSCLLTVG IQVLASNVPT AKPNLSTVTT INNHLCATVN
801: QITSALSNTI TPVIASSADV SNQEVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)