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AT5G46840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AB022221EMBL:AK228177EMBL:BT009688EMBL:CP002688EnsemblPlants:AT5G46840
EnsemblPlants:AT5G46840.1entrez:834728ExpressionAtlas:Q9LUK6Gene3D:3.30.70.330GeneID:834728GO:GO:0000166GO:GO:0003676
Gramene:AT5G46840.1hmmpanther:PTHR24012hmmpanther:PTHR24012:SF476IntAct:Q9LUK6InterPro:IPR000504InterPro:IPR012677OMA:LAHNMAV
Pfam:PF00076Pfam:PF14259Pfscan:PS50102PhylomeDB:Q9LUK6PROSITE:PS50102Proteomes:UP000006548RefSeq:NP_199496.1
SMART:SM00360SMR:Q9LUK6STRING:3702.AT5G46840.1SUPFAM:SSF54928TAIR:AT5G46840UniGene:At.29928UniProt:Q9LUK6
Coordinates (TAIR10) chr5:+:19005651..19007609
Molecular Weight (calculated) 56500.10 Da
IEP (calculated) 10.58
GRAVY (calculated) -1.13
Length 501 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKKSKVTE PESQNDESQT IFSTLFSGEV ESSGFASLFS ADNPFRRKQP QEIKESSIPD EKKGDKRNAE NEEEEEETDL PVKTKKSKKE KKLTDSGDEK
101: ETISEAVEES GLVSKRKKRK RDEIENEYET KKYGSVEMKE KKVGEKRKKA DEVADTMVSK EGFDDESKLL RTVFVGNLPL KVKKKVILKE FSKFGEVESV
201: RIRSVPIVDS KRTRKGAIML KQINEKASSV HAYVVFETEQ SAAASLAHNM SLIDGNHVRV DRACPPRKKQ KGHDDTHLYD PKRTVFMGNL PFDVKDEEVY
301: QLFTGKSNLE NSIEAVRVIR DPHLNIGKGI AYVLFKTREA ANLVLKKGYL KLRERELRIS RVKPDTPSKR KSNPSEAYSP AQKRLQKDKV VTPTPTGKAN
401: LSYQGVRASK SGDDKKTPYQ KSSAQTKMRP RGSSSNDNKK SGNNSASKER SQKRPAVAAR KAKANAKGSK ESGGKRFAGT KRKQENRTPE SFSKKKKTKR
501: F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)