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AT5G46780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 4455 Blast hits to 3562 proteins in 419 species: Archae - 0; Bacteria - 294; Metazoa - 1785; Fungi - 574; Plants - 1062; Viruses - 216; Other Eukaryotes - 524 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW9AeggNOG:ENOG4110557EMBL:AB016882EMBL:BT025787EMBL:CP002688EnsemblPlants:AT5G46780EnsemblPlants:AT5G46780.1
EnsemblPlants:AT5G46780.2entrez:834721GeneID:834721Gramene:AT5G46780.1Gramene:AT5G46780.2hmmpanther:PTHR33783hmmpanther:PTHR33783:SF2
IntAct:Q9FIP7InterPro:IPR008889KEGG:ath:AT5G46780OMA:HHHLGVNPfam:PF05678Proteomes:UP000006548RefSeq:NP_199490.1
RefSeq:NP_851143.1STRING:3702.AT5G46780.1TAIR:AT5G46780UniGene:At.29931UniProt:Q9FIP7
Coordinates (TAIR10) chr5:+:18979236..18979949
Molecular Weight (calculated) 26111.60 Da
IEP (calculated) 10.58
GRAVY (calculated) -0.88
Length 237 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDQSNRGND NHNNDHHHHH LGVNKMGKNI RKDPPNQQNQ QQNPQALVYN INKTDFRSIV QQLTGLGSTS SVNPPQTNHP KPPNSRLVKV RPAPLTQLNH
101: PPPPPPPPPP VQSVPIASEP VQPVNQFSSN PAESPISAYM RYLIESSPVG NRVQPQNQNP VQPSTGLFQS HQTGPNPMSF QSPASQFALS PQPRSPFPLF
201: SPNFAFSPRF LGGSNESLPP PSPGFFFPLL SPLWKNQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)