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AT5G46750.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23266962 (2013): Golgi Golgi apparatus
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF-GAP domain 9
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational
Description (TAIR10)
ARF-GAP domain 9 (AGD9); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 8 (TAIR:AT4G17890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19966eggNOG:COG5347eggNOG:KOG0706EMBL:AB016882
EMBL:AY099693EMBL:AY128872EMBL:CP002688EnsemblPlants:AT5G46750
EnsemblPlants:AT5G46750.1entrez:834718GeneID:834718Genevisible:Q9FIQ0
GO:GO:0005096GO:GO:0009737GO:GO:0046872Gramene:AT5G46750.1
hmmpanther:PTHR23180hmmpanther:PTHR23180:SF275HOGENOM:HOG000162970InParanoid:Q9FIQ0
IntAct:Q9FIQ0InterPro:IPR001164iPTMnet:Q9FIQ0KEGG:ath:AT5G46750
KO:K12493OMA:EDELQGMPaxDb:Q9FIQ0Pfam:PF01412
Pfam:Q9FIQ0Pfscan:PS50115PhylomeDB:Q9FIQ0PRIDE:Q9FIQ0
PRINTS:PR00405PRO:PR:Q9FIQ0PROSITE:PS50115ProteinModelPortal:Q9FIQ0
Proteomes:UP000006548Reactome:R-ATH-199997RefSeq:NP_199487.1SMART:SM00105
SMR:Q9FIQ0STRING:3702.AT5G46750.1SUPFAM:SSF57863TAIR:AT5G46750
tair10-symbols:AGD9UniGene:At.29932UniProt:Q9FIQ0
Coordinates (TAIR10) chr5:-:18969950..18971817
Molecular Weight (calculated) 43552.60 Da
IEP (calculated) 8.58
GRAVY (calculated) -0.55
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MATENLTDKN VVFRKLKSKS ENKVCFDCSA KNPTWASVPY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SPEQLRTMMF GGNNRAQVFF KQHGWNDGGK
101: IEAKYTSRAA DMYRQTLAKE VAKAMAEETV LPSLSSVATS QPVESSENGF TSESPKESSL KQEAAVVSSP KASQKVVAST FKKPLVSRKS GKTGGLGARK
201: LTTKSKDNLY EQKPEEPVPV IPAASPTNDT SAAGSSFASR FEYFDDEQSG GQSGTRVLSH VAPPKSSNFF NEFGMDSAFP KKSSSSSSKA QVEETDEARK
301: KFSNAKSISS AQFFGNQNRD ADLDSKATLQ KFSGSAAISS SDLFGHGPDD SNIDITASDL INRISFQAQQ DMSSIANLAE ETKNKLGTFA SSIFSDLQDR
401: ML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)