suba logo
AT5G46730.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycine-rich protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 448555 Blast hits to 73639 proteins in 3057 species: Archae - 1103; Bacteria - 116328; Metazoa - 161151; Fungi - 31669; Plants - 45641; Viruses - 5898; Other Eukaryotes - 86765 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX0TeggNOG:ENOG41104EIEMBL:BT008615EMBL:CP002688
EnsemblPlants:AT5G46730EnsemblPlants:AT5G46730.1entrez:834716ExpressionAtlas:Q7Y218
GeneID:834716Gramene:AT5G46730.1OMA:VSICYATProteomes:UP000006548
RefSeq:NP_199485.2TAIR:AT5G46730UniGene:At.47261UniProt:Q7Y218
Coordinates (TAIR10) chr5:+:18964030..18964902
Molecular Weight (calculated) 22968.80 Da
IEP (calculated) 6.09
GRAVY (calculated) -0.35
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSLKAFSTV FFLILGVSIC YATSRNLLNY GQASGGGGHG GGGGSGGVSS GGYGGESGGG YGGGSGEGAG GGYGGAEGYA SGGGSGHGGG GGGAASSGGY
101: ASGAGEGGGG GYGGAAGGHA GGGGGGSGGG GGSAYGAGGE HASGYGNGAG EGGGAGASGY GGGAYGGGGG HGGGGGGGSA GGAHGGSGYG GGEGGGAGGG
201: GSHGGAGGYG GGGGGGSGGG GAYGGGGAHG GGYGSGGGEG GGYGGGAAGG YGGGGGGGEG GGGSYGGEHG GGSGGGHGGG GGHGGGGYAP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)