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AT5G46680.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.900
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB016882EMBL:AK221607
EMBL:AY084563EMBL:CP002688EnsemblPlants:AT5G46680EnsemblPlants:AT5G46680.1
entrez:834711Gene3D:1.25.40.10GeneID:834711Genevisible:Q56XR6
Gramene:AT5G46680.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF489HOGENOM:HOG000239567
InParanoid:Q56XR6InterPro:IPR002885InterPro:IPR011990iPTMnet:Q56XR6
KEGG:ath:AT5G46680OMA:QAARKTHPaxDb:Q56XR6Pfam:PF01535
Pfam:PF12854Pfam:PF13041Pfam:Q56XR6Pfscan:PS51375
PhylomeDB:Q56XR6PRIDE:Q56XR6PRO:PR:Q56XR6PROSITE:PS51375
ProteinModelPortal:Q56XR6Proteomes:UP000006548RefSeq:NP_568665.1SMR:Q56XR6
STRING:3702.AT5G46680.1SUPFAM:SSF81901TAIR:AT5G46680TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.29936UniProt:Q56XR6
Coordinates (TAIR10) chr5:+:18941118..18942524
Molecular Weight (calculated) 52509.50 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.06
Length 468 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRGLMKFPG ISTKLLNISV NSLCKFRNLE RAETLLIDGI RLGVLPDVIT YNTLIKGYTR FIGIDEAYAV TRRMREAGIE PDVTTYNSLI SGAAKNLMLN
101: RVLQLFDEML HSGLSPDMWS YNTLMSCYFK LGRHGEAFKI LHEDIHLAGL VPGIDTYNIL LDALCKSGHT DNAIELFKHL KSRVKPELMT YNILINGLCK
201: SRRVGSVDWM MRELKKSGYT PNAVTYTTML KMYFKTKRIE KGLQLFLKMK KEGYTFDGFA NCAVVSALIK TGRAEEAYEC MHELVRSGTR SQDIVSYNTL
301: LNLYFKDGNL DAVDDLLEEI EMKGLKPDDY THTIIVNGLL NIGNTGGAEK HLACIGEMGM QPSVVTCNCL IDGLCKAGHV DRAMRLFASM EVRDEFTYTS
401: VVHNLCKDGR LVCASKLLLS CYNKGMKIPS SARRAVLSGI RETVSYQAAR KTHIKIKAAI ECNTLMYP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)