suba logo
AT5G46670.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 0.756
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G55780.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
EMBL:AB016882EMBL:CP002688EMBL:DQ056709EnsemblPlants:AT5G46670
EnsemblPlants:AT5G46670.1entrez:834710GeneID:834710GO:GO:0008270
GO:GO:0047134Gramene:AT5G46670.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152
HOGENOM:HOG000131760InterPro:IPR004146KEGG:ath:AT5G46670Pfam:PF03107
Pfam:PF07649PhylomeDB:Q9FIQ8Proteomes:UP000006548RefSeq:NP_199479.1
SMR:Q9FIQ8SUPFAM:SSF57889TAIR:AT5G46670UniGene:At.55409
UniProt:Q9FIQ8
Coordinates (TAIR10) chr5:+:18939041..18940039
Molecular Weight (calculated) 39200.00 Da
IEP (calculated) 6.90
GRAVY (calculated) -0.47
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MIDDGEPFER IAEGIILHPF HSHQLQLEIF RDYDEKKYCR GCALPIYEGQ FYSCMELECH YILHKSCAEA PRMKRYPLFP HPLTLKVATT HDSGRGHFCC
101: SECGRDGNGF FYEYRKEQKI FRLDLRCASI MEPYEYQGHQ HPLFLPWYTE EKTPCQVCKY KSYNSKLICM ECDYSICLRC ATFPYKARYK HDSHFLTICD
201: GKEANDQPDW CEVCECKIED VKKPGYNKNM QNVEKRFYKC NDCCTTLHID CLFGGDMYMK PGETEYDYLS FGVYSFEDRD YNWIDVRALL NSSLSRPICV
301: QCMCRCPFPI FFKLKGNGRI YCSVYCLGFA RL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)