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AT5G46590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NAC domain containing protein 96
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAC domain containing protein 96 (NAC096); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 71 (TAIR:AT4G17980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGG0eggNOG:ENOG410YB66EMBL:AB028605EMBL:AB493778EMBL:BT020305EMBL:BT020555EMBL:CP002688
EnsemblPlants:AT5G46590EnsemblPlants:AT5G46590.1entrez:834702GeneID:834702GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351Gramene:AT5G46590.1hmmpanther:PTHR31989hmmpanther:PTHR31989:SF51HOGENOM:HOG000237406IntAct:Q9LS24InterPro:IPR003441
KEGG:ath:AT5G46590OMA:DYPQIQDPfam:PF02365Pfscan:PS51005PhylomeDB:Q9LS24PROSITE:PS51005Proteomes:UP000006548
RefSeq:NP_199471.1SMR:Q9LS24STRING:3702.AT5G46590.1SUPFAM:SSF101941TAIR:AT5G46590tair10-symbols:anac096tair10-symbols:NAC096
UniGene:At.51256UniProt:Q9LS24
Coordinates (TAIR10) chr5:+:18905679..18906811
Molecular Weight (calculated) 33582.20 Da
IEP (calculated) 4.95
GRAVY (calculated) -0.67
Length 292 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSSCLPPGF RFHPTDEELI EYYLKRKVEG LEIELEVIPV IDLYSFDPWE LPDKSFLPNR DMEWYFFCSR DKKYPNGFRT NRGTKAGYWK ATGKDRKITS
101: RSSSIIGYRK TLVFYKGRAP LGDRSNWIMH EYRLCDDDTS QGSQNLKGAF VLCRVAMKNE IKTNTKIRKI PSEQTIGSGE SSGLSSRVTS PSRDETMPFH
201: SFANPVSTET DSSNIWISPE FILDSSKDYP QIQDVASQCF QQDFDFPIIG NQNMEFPAST SLDQNMDEFM QNGYWTNYGY DQTGLFGYSD FS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)