AT5G46520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46510.1); Has 17530 Blast hits to 12991 proteins in 492 species: Archae - 6; Bacteria - 943; Metazoa - 980; Fungi - 57; Plants - 15109; Viruses - 15; Other Eukaryotes - 420 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18867840..18871976 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 132796.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.42 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1168 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSRNW VYDVFLSFSG KDVRVTFRSH FLKELDRKLI SAFRDNEIER SHSLWPDLEQ AIKDSRIAVV VFSKNYASSS WCLNELLEIV NCNDKIIIPV 0101: FYGVDPSQVR YQIGEFGSIF EKTCKRQTEE VKNQWKKALT DVANMLGFDS AKWDDEAKMI EEIANDVLAK LLLTSSTDSA ENSIGIEDHI ANMSVLLKLE 0201: AEEVRMVGIW GSSGIGKTTI ARALFNQLSR HFPVSKFIDR AFVYKSRETY KGANPDDPNM KLHLQGCFLS EILGKKDIKI DHLGALGERL KHQKTLIIID 0301: DLDDLVVLDS LVGKTNWFGC GSRIIVITNN KQFLRAHGID HIYEVSLPSK ERAQEMFCQS AFGENSPPEG FEELVVEIAW LAGSLPLGLT VFGSALRGRK 0401: KEYWVKMLPR LQNDLDGNIE ETLKVSYDAI GNVKDQALFR LIACLFNHVK VRDIELLLAD SGLDVNIALE NLVDKSLIHV RNDHVEMHRL LQETGRNIVR 0501: SQSTDNPGER EFLVDSNDSR TVLSEGIGTR KVLGISLDTS KVSEFCVHEN AFKGMGNLLF LDISSKTFIE EEVKVHLPEK INYYSVQPKQ LIWDRFPLKC 0601: MPYTFLRNLV KLEMHDSKLE KLWEGAMSFT CLKELDMWAS KYLKEIPDLS KATNIEKLDF GHCWSLVELP SSIRNLNKLL ELNMEYCGEL ETLPTGFNLK 0701: SLDYLNFNEC WKLRTFPEFA TNISNLILAE TSIEEYPSNL YFKNVRELSM GKADSDENKC QGVKPFMPML SPTLTLLELW NIPNLVELSS SFQNLNNLER 0801: LDICYCRNLE SLPTGINLES LVSLNLFGCS RLKRFPDIST NIKYLDLDQT GIEEVPWQIE NFFNLTKLTM KGCRELKCVS LNIFKLKHLG EVSFSNCGAL 0901: TRVDLSCYPS GVEMMKADNA DIVSEETTSS LPDSCVLNVN FMDCVNLDRE PVLHQQSIIF NSMILPGEEV PSYFTYRTSD SQPFGTSSSL PIPLLPTQLS 1001: QPFFRFRVCA VVSASNGVYI GVYSRFKGRI GNKFDSFGEV HNFMEIEKGI HLCIFDCRIR LYKDNVPLSQ LNYDHVDINI HITSGDWRST VVLKEWGIRL 1101: LETGSSAENR LGNPNSTLPH VSQAEEGNMG YYTHVQGLVN EIENSEDSGD NNVETERSKK RMRLHHFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)