AT5G46470.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.723 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes RPS6 (RESISTANT TO P. SYRINGAE 6), a member of the TIR-NBS-LRR class resistance protein. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
RESISTANT TO P. SYRINGAE 6 (RPS6); FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: defense response to bacterium, defense response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:+:18842701..18846809 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128279.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1127 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSSSSSSR NWSYHVFPSF SGEDVRNTFL SHFLKELDRK LIISFKDNEI ERSQSLDPEL KHGIRNSRIA VVVFSKTYAS SSWCLNELLE IVKCKKEFGQ 0101: LVIPIFYNLD PSHVRKQTGD FGKIFEKTCR NKTVDEKIRW KEALTDVANI LGYHIVTWDN EASMIEEIAN DILGKMNISP SNDFEDLVGI EDHITKMSSL 0201: LHLESEEVRM VGIWGPSGIG KTTIARALFS RLSCQFQSSV FIDKVFISKS MEVYSGANLV DYNMKLHLQR AFLAEIFDKK DIKIHVGAME KMVKHRKALI 0301: VIDDLDDQDV LDALADQTQW FGSGSRIIVV TENKHFLRAN RIDHIYKVCL PSNALALEMF CRSAFKKNSP PDDFLELSSE VALRAGNLPL GLNVLGSNLR 0401: GINKGYWIDM LPRLQGLDGK IGKTLRVSYD GLNNRKDEAI FRHIACIFNG EKVSDIKLLL ANSNLDVNIG LKNLVDRSLI CERFNTLEMH SLLQELGKEI 0501: VRTQSNQPGE REFLVDLKDI CDVLEHNTGT KKVLGITLDI DETDELHIHE SSFKGMHNLL FLKIYTKKLD QKKKVRWHLP ERFDYLPSRL RLLRFDRYPS 0601: KCLPSNFHPE NLVKLQMQQS KLEKLWDGVH SLAGLRNMDL RGSRNLKEIP DLSMATNLET LKLSSCSSLV ELPSSIQYLN KLNDLDMSYC DHLETIPSGV 0701: NLKSLDRLNL SGCSRLKSFL DIPTNISWLD IGQTADIPSN LRLQNLDELI LCERVQLRTP LMTMLSPTLT RLTFSNNPSF VEVPSSIQNL YQLEHLEIMN 0801: CRNLVTLPTG INLDSLISLD LSHCSQLKTF PDISTNISDL NLSYTAIEEV PLSIEKLSLL CYLDMNGCSN LLCVSPNISK LKHLERADFS DCVELTEASW 0901: NGSSSEMVKL LPADNFSTVK LNFINCFKLD LTALIQNQTF FMQLILTGEE VPSYFTHRTS GDSISLPHIS VCQSFFSFRG CTVIDVDSFS TISVSFDIEV 1001: CCRFIDRFGN HFDSTDFPGY FITTKLGGHL VVFDCYFPFN EEFTTFLDGQ FNYDHVDIQF RLTNDNSQLK LKGCGILLSE DVPSLDNRPC SPNILPGVCE 1101: DSALERRSFR TKMRMMRMRL LKKLLNR |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)