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AT5G46420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 16S rRNA processing protein RimM family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
16S rRNA processing protein RimM family; FUNCTIONS IN: ribosome binding, nucleotidyltransferase activity; INVOLVED IN: metabolic process, rRNA processing, ribosome biogenesis; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PRC-barrel (InterPro:IPR007903), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618), RimM protein (InterPro:IPR002676), 16S rRNA processing protein RimM (InterPro:IPR011961); BEST Arabidopsis thaliana protein match is: N-acetylglucosamine-1-phosphate uridylyltransferase 1 (TAIR:AT1G31070.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0806eggNOG:ENOG410IRUBEMBL:AB019223EMBL:CP002688EnsemblPlants:AT5G46420EnsemblPlants:AT5G46420.1entrez:834685
Gene3D:2.40.30.60Gene3D:3.90.550.10GeneID:834685GO:GO:0005840GO:GO:0006364GO:GO:0009507GO:GO:0043022
GO:GO:0070569Gramene:AT5G46420.1HAMAP:MF_00014hmmpanther:PTHR11952hmmpanther:PTHR11952:SF10HOGENOM:HOG000241592IntAct:Q9FHG3
InterPro:IPR002618InterPro:IPR002676InterPro:IPR009000InterPro:IPR011033InterPro:IPR011961InterPro:IPR027275InterPro:IPR029044
KEGG:ath:AT5G46420OMA:NCLVENDPANTHER:PTHR11952Pfam:PF01782Pfam:PF05239PhylomeDB:Q9FHG3Proteomes:UP000006548
RefSeq:NP_568663.2SMR:Q9FHG3STRING:3702.AT5G46420.1SUPFAM:SSF50346SUPFAM:SSF50447SUPFAM:SSF53448TAIR:AT5G46420
TIGRfam:TIGR02273TIGRFAMs:TIGR02273UniGene:At.21181UniGene:At.9533UniProt:Q9FHG3
Coordinates (TAIR10) chr5:+:18829999..18832893
Molecular Weight (calculated) 73788.20 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.38
Length 653 amino acids
Sequence (TAIR10)
(BLAST)
001: MLRASLLCSS TSITFTPIQL FNPNSSHRFP RFELSRPVSA LSRTKCHLSL LRARGKSSFL TRSTATDEAV ETSSNSGLDL VEVGFLSGVH GLQGEICIKP
101: NTDFPDLRFS KPGRRWLKQQ LLGQDKIDEV ELVEGRPHPA QKSWILKFRG LDDVDQVRQL VGATLLAEDD DRPELDEGEF YSRDLVGMRV LLKETGQLVG
201: TVANIFDNGG NDLLHVLLDS SMEVCNGNAK TNQLVWIPFV DAIVPDVDLE RKEMYITPPK GLLEVNMRAD DRSKKERRQL EWKERKKQQK RLIAAKKKLC
301: EMEQKHVFDG LRFGEKSQRN LLADHILNVN STLLQKALQS IDTSSKRWNV TEEINALRAR VSECNLSVSR ECLSFDASKE NMGDNFSFLQ QGQNLFSEGK
401: VSICLVLNDH ENEEPEGENG VVSYLHALLD EEQRFIKEED RACVPLVIVS PEHTIEALQK LFQDNDHFGF ESEKIWILKE ETLPVVCSSP EEPKKHKILM
501: KSPWEILESP VGSGGVLSIL ASHGTTDSLS TLGINYLQVH SIETKPQPSQ HYINPMLVGF VSARGAEIGI QVTEESELKN LEMTFSMKFL KRLKGKIEFE
601: AVMKMNSHVQ NVEKEWVESV PSEPNSFEFR SDIYRVLSEC SSSAKICLMN ITV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)