AT5G46410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SCP1-like small phosphatase 4 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a SCP1-like small phosphatase (SSP). Three SSPs form a unique group with long N-terminal extensions: AT5G46410 (SSP4), AT5G11860 (SSP5), AT4G18140 (SSP4b). SSP4 and SSP4b were localized exclusively in the nuclei, whereas SSP5 accumulated in both nuclei and cytoplasm. All three SSPs encodes active CTD phosphatases like animal SCP1 family proteins, with distinct substrate specificities: SSP4 and SSP4b could dephosphorylate both Ser2-PO(4) and Ser5-PO(4) of CTD, whereas SSP5 dephosphorylated only Ser5-PO(4). | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SCP1-like small phosphatase 4 (SSP4); CONTAINS InterPro DOMAIN/s: Dullard-like phosphatase domain (InterPro:IPR011948), NLI interacting factor (InterPro:IPR004274); BEST Arabidopsis thaliana protein match is: SCP1-like small phosphatase 4b (TAIR:AT4G18140.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:18826007..18828156 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51278.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPYIEMKSKI SKVLGVCKKH KASTRNSCSL SKISGDLESI TAAITTCHDD EKQHPGLDTF SRESETNEPA EMLVEDTSQS QGFAPWVDGS QSVENMENAC 101: NHMSNSDTIF SPVLNDELDG TGRVFTAGNS VIWETPRWGA DESSNKICFD NQTCNVSDFY ISDVLIASLP FDESGNNDAF TEISPLPHYI FPEQYMVLPY 201: LEDGSANKDD IKSDTDKINL DNHDLFLAFN RTRSYNVEPD DRAESEVAED FDPQLFIKNQ PELSDVVSNY WPRDTLRKKS VTLVLDLDET LVHSTLESCN 301: VADFSFRVFF NMQENTVYVR QRPHLYRFLE RVGELFHVVI FTASHSIYAS QLLDILDPDG KFISQRFYRD SCILLDGIYT KDLTVLGLDL AKVAIIDNCP 401: QVYRLQINNG IPIKSWYDDP TDDGLITILP FLETLAVADD VRPIIGRRFG NKE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)