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AT5G46350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 8
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-c
Computational
Description (TAIR10)
WRKY DNA-binding protein 8 (WRKY8); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657), Transcription factor, WRKY group IIc (InterPro:IPR017396); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 28 (TAIR:AT4G18170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:19927eggNOG:ENOG410IW0MeggNOG:ENOG410YIC2EMBL:AB010698EMBL:AF404855EMBL:AY063916EMBL:AY096426
EMBL:CP002688EnsemblPlants:AT5G46350EnsemblPlants:AT5G46350.1entrez:834678Gene3D:2.20.25.80GeneID:834678Genevisible:Q9FL26
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009737GO:GO:0042742GO:GO:0043565GO:GO:0050832
GO:GO:0051607GO:GO:0070301GO:GO:1901002Gramene:AT5G46350.1hmmpanther:PTHR31221hmmpanther:PTHR31221:SF19HOGENOM:HOG000238090
InParanoid:Q9FL26InterPro:IPR003657InterPro:IPR017396iPTMnet:Q9FL26KEGG:ath:AT5G46350OMA:NRRTAMFPaxDb:Q9FL26
Pfam:PF03106Pfam:Q9FL26Pfscan:PS50811PhylomeDB:Q9FL26PIRSF:PIRSF038130PRO:PR:Q9FL26PROSITE:PS50811
ProteinModelPortal:Q9FL26Proteomes:UP000006548RefSeq:NP_199447.1SMART:SM00774SMR:Q9FL26STRING:3702.AT5G46350.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT5G46350tair10-symbols:ATWRKY8tair10-symbols:WRKY8UniGene:At.26517UniProt:Q9FL26
Coordinates (TAIR10) chr5:-:18801403..18803901
Molecular Weight (calculated) 37295.90 Da
IEP (calculated) 8.09
GRAVY (calculated) -1.02
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MSHEIKDLNN YHYTSSYNHY NINNQNMINL PYVSGPSAYN ANMISSSQVG FDLPSKNLSP QGAFELGFEL SPSSSDFFNP SLDQENGLYN AYNYNSSQKS
101: HEVVGDGCAT IKSEVRVSAS PSSSEADHHP GEDSGKIRKK REVRDGGEDD QRSQKVVKTK KKEEKKKEPR VSFMTKTEVD HLEDGYRWRK YGQKAVKNSP
201: YPRSYYRCTT QKCNVKKRVE RSYQDPTVVI TTYESQHNHP IPTNRRTAMF SGTTASDYNP SSSPIFSDLI INTPRSFSND DLFRVPYASV NVNPSYHQQQ
301: HGFHQQESEF ELLKEMFPSV FFKQEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)