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AT5G46320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MADS-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MADS-box family protein; BEST Arabidopsis thaliana protein match is: AGAMOUS-like 102 (TAIR:AT1G47760.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB010698EMBL:CP002688EMBL:DQ447043EnsemblPlants:AT5G46320EnsemblPlants:AT5G46320.1
entrez:834675GeneID:834675Gramene:AT5G46320.1KEGG:ath:AT5G46320ncoils:CoilOMA:GQEQNIKPhylomeDB:Q9FL29
Proteomes:UP000006548RefSeq:NP_199444.1STRING:3702.AT5G46320.1TAIR:AT5G46320UniGene:At.65646UniProt:Q9FL29
Coordinates (TAIR10) chr5:-:18788246..18788888
Molecular Weight (calculated) 13726.80 Da
IEP (calculated) 10.55
GRAVY (calculated) -0.67
Length 118 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRHFRKTDT LARLCSIDAG VLINPSTDVS ARRVRSSTRQ TRILKNQAKL DSLMAELEQI KAYEKVLRKG QEQNIKKYNR KEISDLKLED LVVFQKKLEN
101: LQDDLKKKRV ELEASLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)