AT5G46270.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Disease resistance protein (TIR-NBS-LRR class) family | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 19108 Blast hits to 13517 proteins in 561 species: Archae - 10; Bacteria - 780; Metazoa - 1004; Fungi - 46; Plants - 16614; Viruses - 15; Other Eukaryotes - 639 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:18764833..18769090 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 129684.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.71 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1139 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MCSNFPPLIL SMASSSSSRN WLYDVFLSFR GGDVRVTFRS HFLKELDRKL ITAFRDNEIE RSHSLWPDLE QAIKDSRIAV VIFSKNYASS SWCLNELLEI 0101: VNCNDKIVIP VFYGVDPSQV RHQIGDFGKI FEKTCKRQTE QVKNQWKKAL TDVANMLGFD SATWDDEAKM IEEIANDVLA KLLLTTPKDF ENFVGIEDHI 0201: ANMSVLLKLE AEEVRMVGIW GSSGIGKTTI ARALFNQLSR HFPVSKFIDR AFVYKSREIF SRANPDDHNM KLHLQEKLLS EILRMPDIKI DHLGVLGERL 0301: QHQKVLIIVD DLDDQVILDS LVGQTQWFGS GSRIIAVTNN KHFLRAHEID HIYEVSLPTQ QHALAMLCQS AFRKKSPPEG FEMLVVQVAR HVDSLPLGLN 0401: VLGSYLRGRD KEYWMEMLPR LENGLHDKIE KILRISYDGL GSEEDKAIFR HIACLFNHME VTTITSLLTD LGINIGLKNL VDKSIIHVRR GCVEMHRMLQ 0501: EMGRKIVRTQ SIDKPGKREF LVDPNDISDV LSEGIGTQKV LGISLNTGEI DELYVHESAF KGMSNLRFLE IDSKNFGKAG RLYLPESLDY LPPRLKLLCW 0601: PNFPMRCMPS NFRPENLVTL KMPNSKLHKL WEGVASLTCL KEMDMVGSSN LKEIPDLSMP TNLEILKLGF CKSLVELPSS IRNLNKLLKL DMEFCHSLEI 0701: LPTGFNLKSL DHLNFRYCSE LRTFPEFSTN ISVLMLFGTN IEEFPNLENL VELSLSKEES DGKQWDGVKP LTPFLEMLSP TLKSLKLENI PSLVELPSSF 0801: QNLNQLKELS ITYCRNLETL PTGINLKSLN YLCFKGCSQL RSFPEISTNI SVLNLEETGI EEVPWQIENF FNLTKLTMRS CSKLKCLSLN IPKMKTLWDV 0901: DFSDCAALTV VNLSGYPSDT LSEEEDDSLD PFLDFRGCFS LDPETVLHQE SVIFNSMAFP GEQVPSYFTY RTTGTSTILP NIPLLPTQLS QPFFRFRVCA 1001: VATAFNIVSI QVNSRFTGRF GNSFDFFGEG HELMEIRKGD MLIFDCRIPF NEDNALLARG DYDHVDMNIH ISGDSESTFE LKGWGIRLLE DCSSVENRLV 1101: NPTHAYTPVQ GLVNEIEHNE DSGDNNVETK RSAKRMRIT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)