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AT5G46270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Disease resistance protein (TIR-NBS-LRR class) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Disease resistance protein (TIR-NBS-LRR class) family; FUNCTIONS IN: transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding; INVOLVED IN: signal transduction, apoptosis, defense response, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT5G46260.1); Has 19108 Blast hits to 13517 proteins in 561 species: Archae - 10; Bacteria - 780; Metazoa - 1004; Fungi - 46; Plants - 16614; Viruses - 15; Other Eukaryotes - 639 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:ENOG410IGA8EMBL:CP002688EnsemblPlants:AT5G46270EnsemblPlants:AT5G46270.1entrez:834669Gene3D:3.40.50.10140
Gene3D:3.40.50.300Gene3D:3.80.10.10GeneID:834669GO:GO:0005524GO:GO:0007165GO:GO:0043531Gramene:AT5G46270.1
hmmpanther:PTHR11017hmmpanther:PTHR11017:SF20InParanoid:F4KG41InterPro:IPR000157InterPro:IPR002182InterPro:IPR003593InterPro:IPR011713
InterPro:IPR011991InterPro:IPR027417InterPro:IPR032675iPTMnet:F4KG41KEGG:ath:AT5G46270OMA:PLAMASCPaxDb:F4KG41
Pfam:PF00931Pfam:PF01582Pfam:PF07725Pfscan:PS50104PRIDE:F4KG41PROSITE:PS50104ProteinModelPortal:F4KG41
Proteomes:UP000006548RefSeq:NP_199439.5SMART:SM00255SMART:SM00382SMR:F4KG41STRING:3702.AT5G46270.1SUPFAM:SSF46785
SUPFAM:SSF52058SUPFAM:SSF52200SUPFAM:SSF52540TAIR:AT5G46270UniGene:At.70295UniProt:F4KG41
Coordinates (TAIR10) chr5:-:18764833..18769090
Molecular Weight (calculated) 129684.00 Da
IEP (calculated) 5.71
GRAVY (calculated) -0.19
Length 1139 amino acids
Sequence (TAIR10)
(BLAST)
0001: MCSNFPPLIL SMASSSSSRN WLYDVFLSFR GGDVRVTFRS HFLKELDRKL ITAFRDNEIE RSHSLWPDLE QAIKDSRIAV VIFSKNYASS SWCLNELLEI
0101: VNCNDKIVIP VFYGVDPSQV RHQIGDFGKI FEKTCKRQTE QVKNQWKKAL TDVANMLGFD SATWDDEAKM IEEIANDVLA KLLLTTPKDF ENFVGIEDHI
0201: ANMSVLLKLE AEEVRMVGIW GSSGIGKTTI ARALFNQLSR HFPVSKFIDR AFVYKSREIF SRANPDDHNM KLHLQEKLLS EILRMPDIKI DHLGVLGERL
0301: QHQKVLIIVD DLDDQVILDS LVGQTQWFGS GSRIIAVTNN KHFLRAHEID HIYEVSLPTQ QHALAMLCQS AFRKKSPPEG FEMLVVQVAR HVDSLPLGLN
0401: VLGSYLRGRD KEYWMEMLPR LENGLHDKIE KILRISYDGL GSEEDKAIFR HIACLFNHME VTTITSLLTD LGINIGLKNL VDKSIIHVRR GCVEMHRMLQ
0501: EMGRKIVRTQ SIDKPGKREF LVDPNDISDV LSEGIGTQKV LGISLNTGEI DELYVHESAF KGMSNLRFLE IDSKNFGKAG RLYLPESLDY LPPRLKLLCW
0601: PNFPMRCMPS NFRPENLVTL KMPNSKLHKL WEGVASLTCL KEMDMVGSSN LKEIPDLSMP TNLEILKLGF CKSLVELPSS IRNLNKLLKL DMEFCHSLEI
0701: LPTGFNLKSL DHLNFRYCSE LRTFPEFSTN ISVLMLFGTN IEEFPNLENL VELSLSKEES DGKQWDGVKP LTPFLEMLSP TLKSLKLENI PSLVELPSSF
0801: QNLNQLKELS ITYCRNLETL PTGINLKSLN YLCFKGCSQL RSFPEISTNI SVLNLEETGI EEVPWQIENF FNLTKLTMRS CSKLKCLSLN IPKMKTLWDV
0901: DFSDCAALTV VNLSGYPSDT LSEEEDDSLD PFLDFRGCFS LDPETVLHQE SVIFNSMAFP GEQVPSYFTY RTTGTSTILP NIPLLPTQLS QPFFRFRVCA
1001: VATAFNIVSI QVNSRFTGRF GNSFDFFGEG HELMEIRKGD MLIFDCRIPF NEDNALLARG DYDHVDMNIH ISGDSESTFE LKGWGIRLLE DCSSVENRLV
1101: NPTHAYTPVQ GLVNEIEHNE DSGDNNVETK RSAKRMRIT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)