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AT5G46250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: RNA processing; LOCATED IN: ribonucleoprotein complex, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein (TAIR:AT3G19090.1); Has 1603 Blast hits to 1601 proteins in 212 species: Archae - 0; Bacteria - 4; Metazoa - 875; Fungi - 249; Plants - 311; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
Protein Annotations
BioGrid:19916eggNOG:ENOG4110VUAeggNOG:KOG1855EMBL:AB010698EMBL:AY050403EMBL:BT000588EMBL:CP002688
EnsemblPlants:AT5G46250EnsemblPlants:AT5G46250.1EnsemblPlants:AT5G46250.2EnsemblPlants:AT5G46250.3entrez:834667ExpressionAtlas:Q94A38Gene3D:1.10.10.10
Gene3D:3.30.70.330GeneID:834667Genevisible:Q94A38GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0006396GO:GO:0030529hmmpanther:PTHR22792hmmpanther:PTHR22792:SF58HOGENOM:HOG000244026InParanoid:Q94A38
IntAct:Q94A38InterPro:IPR000504InterPro:IPR002344InterPro:IPR006630InterPro:IPR011991InterPro:IPR012677KEGG:ath:AT5G46250
KO:K15191OMA:GRVHDQTPaxDb:Q94A38Pfam:PF00076Pfam:PF05383Pfam:Q94A38Pfscan:PS50102
Pfscan:PS50961PhylomeDB:Q94A38PRIDE:Q94A38PRINTS:PR00302PRO:PR:Q94A38PROSITE:PS50102PROSITE:PS50961
ProteinModelPortal:Q94A38Proteomes:UP000006548RefSeq:NP_001078721.1RefSeq:NP_568660.3RefSeq:NP_851141.1SMART:SM00360SMART:SM00715
SMR:Q94A38STRING:3702.AT5G46250.1SUPFAM:SSF46785SUPFAM:SSF54928TAIR:AT5G46250UniGene:At.9180UniProt:Q94A38
Coordinates (TAIR10) chr5:+:18755388..18758056
Molecular Weight (calculated) 46844.40 Da
IEP (calculated) 6.56
GRAVY (calculated) -0.95
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLPLRSGE KMESPSISDA VPLHAPEDAT ADFSQPQSPL HEVDSFPVTE SSDDVVVNVS EIPNLSPSDD DFDHERNSGE DRDQDHGENP VETDGVVVPI
101: DELNQKIIRQ VEYYFSDENL PTDKFLLNAM KRNKKGFVPI STIATFHKMK KLTRDHALIV SALKESSFLV VSADEKKVKR LSPLPEIRDP KIFTVLVENL
201: PEDHSNENIR EIFGKAGSIK SVSICDPNAV EESEKGGKKE NFIRTRLHAF VEYETVEAAE KAAATLNNEQ DWRNGLRVKL LEQAAGKFAQ RRPARREVDK
301: EKDTTGRVHD QTGGEKNKKT REHQNHRLHH SDNPADDDGG NHQKDKNGNK GRVVGQGRRQ NHQGGNGIGH GTASSSSHPN YHPVEVSKRP PGPRMPDGTR
401: GFTMGRGKAI PPPTSTQTSH EV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)