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AT5G46230.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.800
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF538
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G09310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
DNASU:834665eggNOG:ENOG410IYRNeggNOG:ENOG4111URZEMBL:AB010698
EMBL:AY085507EMBL:BT026341EMBL:CP002688EnsemblPlants:AT5G46230
EnsemblPlants:AT5G46230.1entrez:834665Gene3D:2.30.240.10GeneID:834665
Gramene:AT5G46230.1hmmpanther:PTHR31676hmmpanther:PTHR31676:SF7InterPro:IPR007493
KEGG:ath:AT5G46230OMA:MTEIGHNPfam:PF04398PhylomeDB:Q9FL37
Proteomes:UP000006548RefSeq:NP_568659.1SMR:Q9FL37STRING:3702.AT5G46230.1
SUPFAM:0051283SUPFAM:SSF141562TAIR:AT5G46230UniGene:At.29966
UniProt:Q9FL37
Coordinates (TAIR10) chr5:-:18742593..18743024
Molecular Weight (calculated) 16173.30 Da
IEP (calculated) 7.51
GRAVY (calculated) -0.56
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSQETKSDQ REGAEICNGE SNCKQKAKEI LSTMNLPKGL LPLDNMTEIG HNKSTGYVWI KIKNKVQHRF KAIGRNVSYD SEVTAILENR RMSQLTGIKS
101: KEILIWVTIS EIFVNHQDPT QITFANPTGL SRTFPVTAFE EDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)