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AT5G46180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ornithine-delta-aminotransferase
Curator
Summary (TAIR10)
Encodes an ornithine delta-aminotransferase that is transcriptionally up-regulated in young seedlings and in response to salt stress. It is unlikely to play a role in salt-stress-induced proline accumulation, however, it appears to participate in arginine and ornithine catabolism.
Computational
Description (TAIR10)
ornithine-delta-aminotransferase (DELTA-OAT); FUNCTIONS IN: ornithine-oxo-acid transaminase activity, zinc ion binding; INVOLVED IN: ornithine catabolic process, hyperosmotic salinity response, proline biosynthetic process, arginine catabolic process to glutamate; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Ornithine aminotransferase (InterPro:IPR010164), Aminotransferase class-III (InterPro:IPR005814), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 1 (TAIR:AT1G80600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G46180-MONOMERBioCyc:MetaCyc:AT5G46180-MONOMERBRENDA:2.6.1.13EC:2.6.1.13eggNOG:COG4992eggNOG:KOG1402EMBL:AB006698
EMBL:BT023421EMBL:BT029160EMBL:CP002688EnsemblPlants:AT5G46180EnsemblPlants:AT5G46180.1entrez:834660Gene3D:3.40.640.10
Gene3D:3.90.1150.10GeneID:834660Genevisible:Q9FNK4GO:GO:0004587GO:GO:0005739GO:GO:0005759GO:GO:0006561
GO:GO:0006593GO:GO:0008270GO:GO:0009626GO:GO:0009651GO:GO:0009816GO:GO:0010121GO:GO:0019544
GO:GO:0030170GO:GO:0042538GO:GO:0042802GO:GO:0051646Gramene:AT5G46180.1gramene_pathway:2.6.1.13gramene_pathway:ARG-PRO-PWY
gramene_pathway:CITRULBIO-PWYgramene_pathway:PWY-3341gramene_pathway:PWY-4981gramene_plant_reactome:1119289gramene_plant_reactome:1119318gramene_plant_reactome:1119495gramene_plant_reactome:1119610
gramene_plant_reactome:6873929gramene_plant_reactome:6874836gramene_plant_reactome:6877412gramene_plant_reactome:6877636hmmpanther:PTHR11986hmmpanther:PTHR11986:SF18HOGENOM:HOG000020206
InParanoid:Q9FNK4InterPro:IPR005814InterPro:IPR010164InterPro:IPR015421InterPro:IPR015422InterPro:IPR015424KEGG:00330+2.6.1.13
KEGG:ath:AT5G46180KO:K00819OMA:MFACDWEPANTHER:PTHR11986PANTHER:PTHR11986:SF18PaxDb:Q9FNK4Pfam:PF00202
Pfam:Q9FNK4PhylomeDB:Q9FNK4PRIDE:Q9FNK4PRO:PR:Q9FNK4PROSITE:PS00600ProteinModelPortal:Q9FNK4Proteomes:UP000006548
Reactome:R-ATH-70614RefSeq:NP_199430.1scanprosite:PS00600SMR:Q9FNK4STRING:3702.AT5G46180.1SUPFAM:SSF53383SwissPalm:Q9FNK4
TAIR:AT5G46180tair10-symbols:DELTA-OATTIGRfam:TIGR01885TIGRFAMs:TIGR01885UniGene:At.28104UniPathway:UPA00098UniProt:Q9FNK4
Coordinates (TAIR10) chr5:-:18718766..18721271
Molecular Weight (calculated) 52180.90 Da
IEP (calculated) 7.50
GRAVY (calculated) -0.18
Length 475 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATTRRLLY YVSKRFSTAG VRRSYGGLPQ SNSKSPPSSS QRLMELESEF SAHNYHPVPV VFSRANGSTI WDPEGKRYID FLAAYSAVNQ GHCHPKIMKA
101: LQEQVEKLTL SSRAFYNDKF PVFAERLTNM FGYDMVLPMN TGAEGVETAL KLARKWGHEK KNIPKDEAII VSCCGCFHGR TLAIVSMSCD NDATRGFGPL
201: LPGNLKVDFG DADSLEKIFK EKGDRIAGFL FEPIQGEAGV IIPPDGYLKA VRELCTKYNV LMIADEVQSG LARSGKMLAC DWEEIRPDMV ILGKALGGGV
301: IPVSAVLADK DVMLHIKPGQ HGSTFGGNPL ASAVAMASLD VIVEEKLVER SASLGEELRI QLNEIKKQFP KYIKEVRGRG LFNAIEFNSE SLSPVSAYDI
401: CLSLKERGVL AKPTHNTIVR LTPPLSISSD ELRDGSEALH DVLELDLPNL LKINSGKTPV SHITECDRCG RNLYA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)