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AT5G46030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF701, zinc-binding putative (InterPro:IPR007808); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:19893eggNOG:COG4888eggNOG:KOG3214EMBL:AB006698EMBL:AY085452EMBL:BT002010EMBL:BT006515
EMBL:CP002688EnsemblPlants:AT5G46030EnsemblPlants:AT5G46030.1entrez:834644GeneID:834644Genevisible:Q8LEF3GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0046872Gramene:AT5G46030.1hmmpanther:PTHR20934HOGENOM:HOG000159293InParanoid:Q8LEF3
IntAct:Q8LEF3InterPro:IPR007808KEGG:ath:AT5G46030ncoils:CoilOMA:WVDACEEPANTHER:PTHR20934PaxDb:Q8LEF3
Pfam:PF05129Pfam:Q8LEF3PhylomeDB:Q8LEF3PRO:PR:Q8LEF3ProteinModelPortal:Q8LEF3Proteomes:UP000006548RefSeq:NP_568654.1
SMR:Q8LEF3STRING:3702.AT5G46030.1SUPFAM:SSF57783TAIR:AT5G46030UniGene:At.29979UniGene:At.6861UniGene:At.7260
UniProt:Q8LEF3
Coordinates (TAIR10) chr5:+:18670531..18671138
Molecular Weight (calculated) 13885.90 Da
IEP (calculated) 4.07
GRAVY (calculated) -0.86
Length 120 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKRKSRAKP APTKRMDKLD TIFSCPFCNH GSSVECIIDM KHLIGKAACR ICEESFSTTI TALTEAIDIY SEWIDECERV NTAEDDVVQE EEEEVEEEEE
101: EEEEEDDEDD HVSVKRKYNF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)