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AT5G45950.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G45960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G45950-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IVB4
EMBL:AB016870EMBL:AK220862EMBL:CP002688EnsemblPlants:AT5G45950
EnsemblPlants:AT5G45950.1entrez:834635Gene3D:3.40.50.1110GeneID:834635
Genevisible:Q9FJ41GO:GO:0005576GO:GO:0016042GO:GO:0016788
Gramene:AT5G45950.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF218HOGENOM:HOG000237650
InParanoid:Q9FJ41InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT5G45950
OMA:MKGNFPPPaxDb:Q9FJ41Pfam:PF00657Pfam:Q9FJ41
PhylomeDB:Q9FJ41PRIDE:Q9FJ41PRO:PR:Q9FJ41ProteinModelPortal:Q9FJ41
Proteomes:UP000006548RefSeq:NP_199407.1SMR:Q9FJ41STRING:3702.AT5G45950.1
SUPFAM:SSF52266TAIR:AT5G45950UniGene:At.20802UniProt:Q9FJ41
Coordinates (TAIR10) chr5:+:18634155..18636512
Molecular Weight (calculated) 39856.60 Da
IEP (calculated) 8.26
GRAVY (calculated) 0.07
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MLLVAFVTLL VAVALQPLPS VLSLDVHLLR QLAAKHNVTS ILVFGDSSVD PGNNNFIKTE MKGNFPPYGE NFINHKPTGR LCDGLLAPDY IAEAMGYPPI
101: PAFLDPSLTQ ADLTRGASFA SAGSGYDDLT ANISNVWSFT TQANYFLHYK IHLTKLVGPL ESAKMINNAI FLMSMGSNDF LQNYLVDFTR QKQFTVEQYI
201: EFLSHRMLYD AKMLHRLGAK RLVVVGVPPM GCMPLIKYLR GQKTCVDQLN QIAFSFNAKI IKNLELLQSK IGLKTIYVDA YSTIQEAIKN PRKFGFVEAS
301: LGCCGTGTYE YGETCKDMQV CKDPTKYVFW DAVHPTQRMY QIIVKKAIAS ISEEFLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)