suba logo
AT5G45930.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : magnesium chelatase i2
Curator
Summary (TAIR10)
encodes a second Chl I gene (CHLI2), a subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Has ATPase activity, regulated by TRX-f. Involved in the assembly of the Mg chelatase complex.
Computational
Description (TAIR10)
magnesium chelatase i2 (CHLI2); FUNCTIONS IN: magnesium chelatase activity, ATPase activity; INVOLVED IN: chlorophyll biosynthetic process; LOCATED IN: magnesium chelatase complex, chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), Magnesium chelatase, ChlI subunit (InterPro:IPR000523), Magnesium chelatase, ATPase subunit I (InterPro:IPR011775); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT4G18480.1); Has 6443 Blast hits to 6440 proteins in 1624 species: Archae - 292; Bacteria - 4915; Metazoa - 3; Fungi - 0; Plants - 214; Viruses - 0; Other Eukaryotes - 1019 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT5G45930-MONOMEREC:6.6.1.1eggNOG:COG1239eggNOG:ENOG410IESJEMBL:AB016870EMBL:AY140022EMBL:BT015783
EMBL:CP002688EnsemblPlants:AT5G45930EnsemblPlants:AT5G45930.1entrez:834633Gene3D:3.40.50.300GeneID:834633Genevisible:Q5XF33
GO:GO:0005524GO:GO:0009507GO:GO:0009570GO:GO:0009735GO:GO:0010007GO:GO:0015979GO:GO:0015995
GO:GO:0016851GO:GO:0016887Gramene:AT5G45930.1hmmpanther:PTHR32039hmmpanther:PTHR32039:SF9HOGENOM:HOG000225091InParanoid:Q5XF33
InterPro:IPR000523InterPro:IPR003593InterPro:IPR011775InterPro:IPR027417iPTMnet:Q5XF33KEGG:00860+6.6.1.1KEGG:ath:AT5G45930
KO:K03405ncoils:CoilOMA:VEEITMPPaxDb:Q5XF33Pfam:PF01078Pfam:Q5XF33PhylomeDB:Q5XF33
PRIDE:Q5XF33PRO:PR:Q5XF33ProteinModelPortal:Q5XF33Proteomes:UP000006548RefSeq:NP_199405.2SMART:SM00382SMR:Q5XF33
STRING:3702.AT5G45930.1SUPFAM:SSF52540TAIR:AT5G45930tair10-symbols:CHL I2tair10-symbols:CHLI-2tair10-symbols:CHLI2TIGRfam:TIGR02030
TIGRFAMs:TIGR02030UniGene:At.29985UniGene:At.70220UniPathway:UPA00668UniProt:Q5XF33
Coordinates (TAIR10) chr5:+:18628095..18629565
Molecular Weight (calculated) 46100.40 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.27
Length 418 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLGRSPS SILTCPRISS PSSTSSMSHL CFGPEKLSGR IQFNPKKNRS RYHVSVMNVA TEINSVEQAK KIDSKESARP VYPFAAIVGQ DEMKLCLLLN
101: VIDPKIGGVM IMGDRGTGKS TTVRSLVDLL PEITVVSGDP YNSDPRDPEC MGKEVREKVQ KGEELSVIET KINMVDLPLG ATEDRVCGTI DIEKALTEGV
201: KAFEPGLLAK ANRGILYVDE VNLLDDHLVD VLLDSAASGW NTVEREGISI SHPARFILIG SGNPEEGELR PQLLDRFGMH AQVGTVRDAE LRVKIVEERA
301: RFDSNPKEFR ETYQEEQLKL QEQITTARSN LSAVQIDQDL KVKISKVCAE LDVDGLRGDM VINRAARALA ALQGRDQVTA EDVGIVIPNC LRHRLRKDPL
401: ESMDSGILVT EKFYEVFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)