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AT5G45850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF688)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF688); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF688) (TAIR:AT4G18630.1); Has 103 Blast hits to 72 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 1; Plants - 89; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKD7eggNOG:ENOG41115SHEMBL:CP002688EnsemblPlants:AT5G45850EnsemblPlants:AT5G45850.1entrez:834625GeneID:834625
Gramene:AT5G45850.1hmmpanther:PTHR33671hmmpanther:PTHR33671:SF3InParanoid:F4KEN8InterPro:IPR007789iPTMnet:F4KEN8KEGG:ath:AT5G45850
ncoils:CoilOMA:VSMAINQPaxDb:F4KEN8Pfam:PF05097PRIDE:F4KEN8ProteinModelPortal:F4KEN8Proteomes:UP000006548
RefSeq:NP_199397.2TAIR:AT5G45850UniGene:At.29990UniProt:F4KEN8
Coordinates (TAIR10) chr5:-:18599998..18601435
Molecular Weight (calculated) 50718.90 Da
IEP (calculated) 9.85
GRAVY (calculated) -0.85
Length 445 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEKKLNLDA PFLSVRRVPT KPDDPNESEN TKKKTMTTRR REIKDSCQET ENEILIRLLQ DQSFEHVMEP SSVPFKWEQT PGKPKDKKNL VEESDLIKAM
101: EMVSSTASFS VNCSSSGVSE FENNGDGDRS SNVSRDDVIL EYRDLIMSRF LPAAEAISLK MKKEASRVKA EKKKKQSIAL QRVSMAINQD LNNDVDDEEH
201: CDHNHVDGID ALVYSNDSKK GQLGFLPWFC SKNSVDVLTP VLSRIKTCQD VGVKSENIIN PKSIDSVYKT KSTSPRIFKS SKVMSKSQEI DATPRFSNDI
301: SRISLPKSRE TLQIPRNHSR LQQTTDQNQR QEIRFLVEEV KRRSNRNKNR SENLSVSQPP LPKTPSESWL CRTLPRSSTT SSVVSGQFAV VVSGQAARFK
401: KNMEKKTDSQ SKKWETIVKT SYSHHDHVRY SEGLIVVHPT RQHKF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)