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AT5G45790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ubiquitin carboxyl-terminal hydrolase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ubiquitin carboxyl-terminal hydrolase family protein; CONTAINS InterPro DOMAIN/s: RNA recognition domain, plant (InterPro:IPR021099); BEST Arabidopsis thaliana protein match is: Ubiquitin carboxyl-terminal hydrolase family protein (TAIR:AT4G33495.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:CP002688EnsemblPlants:AT5G45790EnsemblPlants:AT5G45790.1entrez:834619ExpressionAtlas:F4KEN1GeneID:834619GO:GO:0016787
Gramene:AT5G45790.1hmmpanther:PTHR31476hmmpanther:PTHR31476:SF12InterPro:IPR021099Pfam:PF11955PRIDE:F4KEN1Proteomes:UP000006548
RefSeq:NP_199391.2TAIR:AT5G45790UniGene:At.55394UniProt:F4KEN1
Coordinates (TAIR10) chr5:+:18572473..18573664
Molecular Weight (calculated) 41641.80 Da
IEP (calculated) 9.24
GRAVY (calculated) -0.38
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MPTLLLQSTK MVKACRFSTN KLMSRWKNLV GLNVNVGAFI GKYPHAFEIF THPFSKNLCC KITEKFKVLI DEEENVVREC EVDAVKRVKK LLLLSKHGVL
101: RVHALRLIRK ELGLPEDFRD SILAKYSSEF RLVDLETLEL VDRDDESLCV AKVEEWREVE YREKWLSKFE TNYAFPIHLP TGFKIEKGFR EELKNWQRVP
201: YVKPYDRKEI SRGLERFEKR VVAVIHELLS LTVEKMVEVE RLAHFRKDLG IEVNVREVIL KHPGIFYVST KGSSQTLFLR EAYSKGCLIE PNPIYNVRRK
301: MLDLVLLKTR YSRMLLQRED ETHREEKSRD VLISSNEDWE GGRDGDWVLP ILGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)